RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Gli2Q0VGT2 1544 aa12.29□□□□□ -0.44
Trim39-205ENSMUST00000173369 Nup155Q99P88 1391 aaKnown RBP12.28□□□□□ -0.44
Trim39-205ENSMUST00000173369 Dennd4bQ3U1Y4 1499 aa12.28□□□□□ -0.44
Trim39-205ENSMUST00000173369 Ttll5Q8CHB8 1328 aa12.28□□□□□ -0.44
Trim39-205ENSMUST00000173369 Mia2Q91ZV0 1396 aa12.27□□□□□ -0.44
Trim39-205ENSMUST00000173369 Amer1Q7TS75 1132 aa12.27□□□□□ -0.45
Trim39-205ENSMUST00000173369 Bcl11aQ9QYE3 773 aa12.26□□□□□ -0.45
Trim39-205ENSMUST00000173369 Xrn1P97789 1719 aaKnown RBP12.25□□□□□ -0.45
Trim39-205ENSMUST00000173369 Slc4a1apE9PX68 744 aa12.25□□□□□ -0.45
Trim39-205ENSMUST00000173369 Fmn2Q9JL04 1578 aa12.25□□□□□ -0.45
Trim39-205ENSMUST00000173369 Las1lA2BE28 776 aaKnown RBP12.24□□□□□ -0.45
Trim39-205ENSMUST00000173369 Alpk3Q924C5 1678 aa12.24□□□□□ -0.45
Trim39-205ENSMUST00000173369 Mphosph9A6H5Y1 991 aa12.24□□□□□ -0.45
Trim39-205ENSMUST00000173369 Kiaa0556Q8C753 1610 aa12.23□□□□□ -0.45
Trim39-205ENSMUST00000173369 Fhad1A6PWD2 1420 aa12.23□□□□□ -0.45
Trim39-205ENSMUST00000173369 AlkP97793 1621 aa12.23□□□□□ -0.45
Trim39-205ENSMUST00000173369 Usp54Q8BL06 1588 aaKnown RBP12.22□□□□□ -0.45
Trim39-205ENSMUST00000173369 Taok2Q6ZQ29 1240 aa12.22□□□□□ -0.45
Trim39-205ENSMUST00000173369 Znf518aB2RRF6 1478 aaKnown RBP12.22□□□□□ -0.45
Trim39-205ENSMUST00000173369 Adgrl2Q8JZZ7 1487 aa12.22□□□□□ -0.45
Trim39-205ENSMUST00000173369 Vps8Q0P5W1 1427 aa12.22□□□□□ -0.45
Trim39-205ENSMUST00000173369 Hecw1Q8K4P8 1604 aa12.21□□□□□ -0.45
Trim39-205ENSMUST00000173369 Stk24Q99KH8 431 aa12.21□□□□□ -0.45
Trim39-205ENSMUST00000173369 Kif14L0N7N1 1674 aaKnown RBP12.21□□□□□ -0.46
Trim39-205ENSMUST00000173369 Naip5Q9R016 1403 aa12.19□□□□□ -0.46
Trim39-205ENSMUST00000173369 Neurod1Q60867 357 aa12.19□□□□□ -0.46
Trim39-205ENSMUST00000173369 Rfx7F8VPJ6 1459 aa12.19□□□□□ -0.46
Trim39-205ENSMUST00000173369 Cyb5rlB1AS42 316 aa12.18□□□□□ -0.46
Trim39-205ENSMUST00000173369 Clstn2Q9ER65 966 aa12.18□□□□□ -0.46
Trim39-205ENSMUST00000173369 Dhx9O70133 1380 aaKnown RBP12.18□□□□□ -0.46
Trim39-205ENSMUST00000173369 Sall3Q62255 1320 aa12.18□□□□□ -0.46
Trim39-205ENSMUST00000173369 Camsap2Q8C1B1 1461 aa12.18□□□□□ -0.46
Trim39-205ENSMUST00000173369 Mast1Q9R1L5 1570 aa12.18□□□□□ -0.46
Trim39-205ENSMUST00000173369 Pkd2O35245 966 aa12.17□□□□□ -0.46
Trim39-205ENSMUST00000173369 Dmrt2Q8BG36 561 aa12.17□□□□□ -0.46
Trim39-205ENSMUST00000173369 Cdc42bpgQ80UW5 1551 aa12.17□□□□□ -0.46
Trim39-205ENSMUST00000173369 Adamtsl3G3UXC7 1706 aa12.17□□□□□ -0.46
Trim39-205ENSMUST00000173369 Asxl1P59598 1514 aa12.17□□□□□ -0.46
Trim39-205ENSMUST00000173369 CatipB9EKE5 520 aa12.16□□□□□ -0.46
Trim39-205ENSMUST00000173369 Hspa5P20029 655 aaKnown RBP12.16□□□□□ -0.46
Trim39-205ENSMUST00000173369 P3h3Q8CG70 732 aa12.16□□□□□ -0.46
Trim39-205ENSMUST00000173369 Cd109Q8R422 1442 aa12.16□□□□□ -0.46
Trim39-205ENSMUST00000173369 Fhod3Q76LL6 1578 aa12.16□□□□□ -0.46
Trim39-205ENSMUST00000173369 Neurl4Q5NCX5 1563 aa12.15□□□□□ -0.46
Trim39-205ENSMUST00000173369 ShprhQ7TPQ3 1674 aa12.14□□□□□ -0.47
Trim39-205ENSMUST00000173369 Ttc21bQ0HA38 1315 aa12.14□□□□□ -0.47
Trim39-205ENSMUST00000173369 Pip4k2bQ80XI4 416 aa12.13□□□□□ -0.47
Trim39-205ENSMUST00000173369 Supt6hQ62383 1726 aaKnown RBP12.13□□□□□ -0.47
Trim39-205ENSMUST00000173369 Zmym4A2A791 1549 aaKnown RBP12.12□□□□□ -0.47
Trim39-205ENSMUST00000173369 Abca6Q8K441 1624 aa12.12□□□□□ -0.47
Trim39-205ENSMUST00000173369 Rgl3Q3UYI5 709 aa12.12□□□□□ -0.47
Trim39-205ENSMUST00000173369 Myom3A2ABU4 1439 aa12.11□□□□□ -0.47
Trim39-205ENSMUST00000173369 CltcQ68FD5 1675 aaKnown RBP12.11□□□□□ -0.47
Trim39-205ENSMUST00000173369 Kif1bQ60575 1816 aaKnown RBP12.11□□□□□ -0.47
Trim39-205ENSMUST00000173369 4930407I10RikD3Z5T8 1512 aa12.1□□□□□ -0.47
Trim39-205ENSMUST00000173369 Arid4bA2CG63 1314 aaKnown RBP12.09□□□□□ -0.47
Trim39-205ENSMUST00000173369 Atp1b4Q99ME6 356 aa12.09□□□□□ -0.47
Trim39-205ENSMUST00000173369 PtprmP28828 1452 aa12.09□□□□□ -0.47
Trim39-205ENSMUST00000173369 Abca17E9PX95 1733 aa12.09□□□□□ -0.47
Trim39-205ENSMUST00000173369 Trpm2Q91YD4 1506 aa12.08□□□□□ -0.48
Trim39-205ENSMUST00000173369 Prex1Q69ZK0 1650 aa12.08□□□□□ -0.48
Trim39-205ENSMUST00000173369 Atp7aQ64430 1491 aa12.08□□□□□ -0.48
Trim39-205ENSMUST00000173369 Myom2Q14BI5 1463 aa12.08□□□□□ -0.48
Trim39-205ENSMUST00000173369 Gm13695A2AK44 830 aa12.07□□□□□ -0.48
Trim39-205ENSMUST00000173369 Topbp1Q6ZQF0 1515 aa12.07□□□□□ -0.48
Trim39-205ENSMUST00000173369 Hfm1D3Z4R1 1434 aa12.07□□□□□ -0.48
Trim39-205ENSMUST00000173369 Ercc6l2Q9JIM3 1537 aa12.07□□□□□ -0.48
Trim39-205ENSMUST00000173369 Txndc2Q6P902 515 aa12.06□□□□□ -0.48
Trim39-205ENSMUST00000173369 Grwd1Q810D6 446 aaKnown RBP12.06□□□□□ -0.48
Trim39-205ENSMUST00000173369 Myo5cE9Q1F5 1742 aa12.06□□□□□ -0.48
Trim39-205ENSMUST00000173369 Zbtb4Q5F293 982 aa12.06□□□□□ -0.48
Trim39-205ENSMUST00000173369 Ylpm1Q9R0I7 1386 aaKnown RBP12.05□□□□□ -0.48
Trim39-205ENSMUST00000173369 Ccer2J3QPU5 274 aa12.05□□□□□ -0.48
Trim39-205ENSMUST00000173369 Plch2A2AP18 1501 aa12.05□□□□□ -0.48
Trim39-205ENSMUST00000173369 Acin1Q9JIX8 1338 aaKnown RBP12.05□□□□□ -0.48
Trim39-205ENSMUST00000173369 Trpm1Q2TV84 1622 aa12.05□□□□□ -0.48
Trim39-205ENSMUST00000173369 Nsd2Q8BVE8 1365 aa12.05□□□□□ -0.48
Trim39-205ENSMUST00000173369 Mroh3A0A1D5RM54 893 aa12.04□□□□□ -0.48
Trim39-205ENSMUST00000173369 DroshaQ5HZJ0 1373 aaKnown RBP12.04□□□□□ -0.48
Trim39-205ENSMUST00000173369 Ahdc1Q6PAL7 1594 aaKnown RBP12.04□□□□□ -0.48
Trim39-205ENSMUST00000173369 Robo2Q7TPD3 1470 aa12.04□□□□□ -0.48
Trim39-205ENSMUST00000173369 Kdm2aP59997 1161 aa12.04□□□□□ -0.48
Trim39-205ENSMUST00000173369 PtprgQ05909 1442 aa12.03□□□□□ -0.48
Trim39-205ENSMUST00000173369 Usp47Q8BY87 1376 aa12.03□□□□□ -0.48
Trim39-205ENSMUST00000173369 Asxl2Q8BZ32 1370 aa12.02□□□□□ -0.49
Trim39-205ENSMUST00000173369 Uggt2E9Q4X2 1504 aa12.02□□□□□ -0.49
Trim39-205ENSMUST00000173369 Os9Q8K2C7 672 aa12.01□□□□□ -0.49
Trim39-205ENSMUST00000173369 Brwd3A2AHJ4 1799 aa12□□□□□ -0.49
Trim39-205ENSMUST00000173369 Rsph4aQ8BYM7 716 aa12□□□□□ -0.49
Trim39-205ENSMUST00000173369 AnkarA2RT91 1465 aa12□□□□□ -0.49
Trim39-205ENSMUST00000173369 Skint5A7XUY5 1461 aa12□□□□□ -0.49
Trim39-205ENSMUST00000173369 Edc4Q3UJB9 1406 aaKnown RBP12□□□□□ -0.49
Trim39-205ENSMUST00000173369 Washc2Q6PGL7 1334 aa12□□□□□ -0.49
Trim39-205ENSMUST00000173369 ErbinQ80TH2 1402 aa11.99□□□□□ -0.49
Trim39-205ENSMUST00000173369 Ifit1bl1D3Z6F0 470 aa11.99□□□□□ -0.49
Trim39-205ENSMUST00000173369 Tarbp1E9Q368 1579 aa11.98□□□□□ -0.49
Trim39-205ENSMUST00000173369 Psme1P97371 249 aa11.98□□□□□ -0.49
Trim39-205ENSMUST00000173369 Arhgap23Q69ZH9 1483 aa11.97□□□□□ -0.49
Trim39-205ENSMUST00000173369 Knl1Q66JQ7 1612 aa11.97□□□□□ -0.49
Trim39-205ENSMUST00000173369 RictorQ6QI06 1708 aa11.97□□□□□ -0.49
Retrieved 100 of 22,080 RNA–protein pairs in 26.4 ms