RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 Rgl3Q3UYI5 709 aa22.37■■□□□ 1.17
Trim39-203ENSMUST00000113706 Mbd5B1AYB6 1498 aa22.36■■□□□ 1.17
Trim39-203ENSMUST00000113706 Cd109Q8R422 1442 aa22.36■■□□□ 1.17
Trim39-203ENSMUST00000113706 Usp54Q8BL06 1588 aaKnown RBP22.35■■□□□ 1.17
Trim39-203ENSMUST00000113706 Gm156Q58A37 223 aa22.33■■□□□ 1.17
Trim39-203ENSMUST00000113706 ShprhQ7TPQ3 1674 aa22.33■■□□□ 1.17
Trim39-203ENSMUST00000113706 Ak9G3UYQ4 1894 aa22.33■■□□□ 1.17
Trim39-203ENSMUST00000113706 Robo2Q7TPD3 1470 aa22.33■■□□□ 1.17
Trim39-203ENSMUST00000113706 Kif1bQ60575 1816 aaKnown RBP22.32■■□□□ 1.16
Trim39-203ENSMUST00000113706 Atp7aQ64430 1491 aa22.31■■□□□ 1.16
Trim39-203ENSMUST00000113706 Mug2P28666 1451 aa22.29■■□□□ 1.16
Trim39-203ENSMUST00000113706 Pde4cQ3UEI1 686 aa22.28■■□□□ 1.16
Trim39-203ENSMUST00000113706 Lemd3Q9WU40 921 aa22.28■■□□□ 1.16
Trim39-203ENSMUST00000113706 Nos1Q9Z0J4 1429 aa22.27■■□□□ 1.16
Trim39-203ENSMUST00000113706 Rock1P70335 1354 aa22.26■■□□□ 1.15
Trim39-203ENSMUST00000113706 Hnrnpul2Q00PI9 745 aaKnown RBP22.26■■□□□ 1.15
Trim39-203ENSMUST00000113706 Myom3A2ABU4 1439 aa22.25■■□□□ 1.15
Trim39-203ENSMUST00000113706 Tarbp1E9Q368 1579 aa22.25■■□□□ 1.15
Trim39-203ENSMUST00000113706 Csrnp3P59055 597 aa22.24■■□□□ 1.15
Trim39-203ENSMUST00000113706 Myo5cE9Q1F5 1742 aa22.24■■□□□ 1.15
Trim39-203ENSMUST00000113706 Iqgap1Q9JKF1 1657 aaKnown RBP22.24■■□□□ 1.15
Trim39-203ENSMUST00000113706 Ncoa1P70365 1447 aa22.24■■□□□ 1.15
Trim39-203ENSMUST00000113706 Dapk1Q80YE7 1442 aa22.23■■□□□ 1.15
Trim39-203ENSMUST00000113706 Adgrl3Q80TS3 1537 aa22.23■■□□□ 1.15
Trim39-203ENSMUST00000113706 Cdk13Q69ZA1 1511 aaKnown RBP22.22■■□□□ 1.15
Trim39-203ENSMUST00000113706 OvosQ3UU35 1456 aa22.2■■□□□ 1.14
Trim39-203ENSMUST00000113706 Washc2Q6PGL7 1334 aa22.2■■□□□ 1.14
Trim39-203ENSMUST00000113706 Kdm5cP41230 1554 aa22.2■■□□□ 1.14
Trim39-203ENSMUST00000113706 Ppip5k1A2ARP1 1436 aa22.19■■□□□ 1.14
Trim39-203ENSMUST00000113706 Znf518aB2RRF6 1478 aaKnown RBP22.19■■□□□ 1.14
Trim39-203ENSMUST00000113706 Cpsf1Q9EPU4 1441 aaKnown RBP22.18■■□□□ 1.14
Trim39-203ENSMUST00000113706 Grwd1Q810D6 446 aaKnown RBP22.18■■□□□ 1.14
Trim39-203ENSMUST00000113706 Nsd2Q8BVE8 1365 aa22.17■■□□□ 1.14
Trim39-203ENSMUST00000113706 Kif3bQ61771 747 aa22.17■■□□□ 1.14
Trim39-203ENSMUST00000113706 Rundc1Q0VDN7 615 aa22.15■■□□□ 1.14
Trim39-203ENSMUST00000113706 Fndc1E9Q043 1732 aa22.15■■□□□ 1.14
Trim39-203ENSMUST00000113706 Edc4Q3UJB9 1406 aaKnown RBP22.15■■□□□ 1.14
Trim39-203ENSMUST00000113706 Polr3aB2RXC6 1390 aa22.15■■□□□ 1.14
Trim39-203ENSMUST00000113706 RalgapbQ8BQZ4 1484 aa22.13■■□□□ 1.13
Trim39-203ENSMUST00000113706 Naip6Q9JIB6 1403 aa22.13■■□□□ 1.13
Trim39-203ENSMUST00000113706 AglF8VPN4 1532 aa22.13■■□□□ 1.13
Trim39-203ENSMUST00000113706 Atp10aO54827 1508 aa22.13■■□□□ 1.13
Trim39-203ENSMUST00000113706 Depdc5P61460 1591 aa22.12■■□□□ 1.13
Trim39-203ENSMUST00000113706 Abca6Q8K441 1624 aa22.11■■□□□ 1.13
Trim39-203ENSMUST00000113706 Ylpm1Q9R0I7 1386 aaKnown RBP22.11■■□□□ 1.13
Trim39-203ENSMUST00000113706 Card11Q8CIS0 1159 aa22.1■■□□□ 1.13
Trim39-203ENSMUST00000113706 Topbp1Q6ZQF0 1515 aa22.1■■□□□ 1.13
Trim39-203ENSMUST00000113706 Ptch1Q61115 1434 aa22.09■■□□□ 1.13
Trim39-203ENSMUST00000113706 Clasp1Q80TV8 1535 aaKnown RBP22.09■■□□□ 1.13
Trim39-203ENSMUST00000113706 Tmem131lQ3U3D7 1597 aa22.09■■□□□ 1.13
Trim39-203ENSMUST00000113706 Smg6P61406 1418 aaKnown RBP22.08■■□□□ 1.13
Trim39-203ENSMUST00000113706 Plch2A2AP18 1501 aa22.08■■□□□ 1.13
Trim39-203ENSMUST00000113706 Adamts13Q769J6 1426 aa22.08■■□□□ 1.12
Trim39-203ENSMUST00000113706 Col17a1Q07563 1470 aa22.07■■□□□ 1.12
Trim39-203ENSMUST00000113706 Cwc22Q8C5N3 908 aaKnown RBP22.07■■□□□ 1.12
Trim39-203ENSMUST00000113706 Kiaa0556Q8C753 1610 aa22.07■■□□□ 1.12
Trim39-203ENSMUST00000113706 AnkarA2RT91 1465 aa22.06■■□□□ 1.12
Trim39-203ENSMUST00000113706 Cdc42bpgQ80UW5 1551 aa22.05■■□□□ 1.12
Trim39-203ENSMUST00000113706 Prex1Q69ZK0 1650 aa22.05■■□□□ 1.12
Trim39-203ENSMUST00000113706 Dip2cE9PWR4 1557 aa22.05■■□□□ 1.12
Trim39-203ENSMUST00000113706 Gli2Q0VGT2 1544 aa22.05■■□□□ 1.12
Trim39-203ENSMUST00000113706 RereQ80TZ9 1558 aa22.04■■□□□ 1.12
Trim39-203ENSMUST00000113706 Cul9Q80TT8 1865 aa22.03■■□□□ 1.12
Trim39-203ENSMUST00000113706 Tulp4Q9JIL5 1547 aa22.02■■□□□ 1.12
Trim39-203ENSMUST00000113706 Hdac5Q9Z2V6 1113 aa22.02■■□□□ 1.12
Trim39-203ENSMUST00000113706 Erich6D3Z6S9 713 aa22.01■■□□□ 1.11
Trim39-203ENSMUST00000113706 1700123L14RikQ3V2K7 440 aa22.01■■□□□ 1.11
Trim39-203ENSMUST00000113706 AdgbG3UZ78 1657 aa22.01■■□□□ 1.11
Trim39-203ENSMUST00000113706 Ttc21bQ0HA38 1315 aa22■■□□□ 1.11
Trim39-203ENSMUST00000113706 Iqgap3F8VQ29 1632 aa22■■□□□ 1.11
Trim39-203ENSMUST00000113706 Ifit1bl1D3Z6F0 470 aa22■■□□□ 1.11
Trim39-203ENSMUST00000113706 Ttc37F8VPK0 1563 aa22■■□□□ 1.11
Trim39-203ENSMUST00000113706 Abcc6Q9R1S7 1498 aa21.99■■□□□ 1.11
Trim39-203ENSMUST00000113706 Mroh3A0A1D5RM54 893 aa21.99■■□□□ 1.11
Trim39-203ENSMUST00000113706 Uggt2E9Q4X2 1504 aa21.99■■□□□ 1.11
Trim39-203ENSMUST00000113706 Znf710Q3U288 666 aa21.98■■□□□ 1.11
Trim39-203ENSMUST00000113706 Plekhg5Q66T02 1073 aa21.97■■□□□ 1.11
Trim39-203ENSMUST00000113706 Sall3Q62255 1320 aa21.96■■□□□ 1.11
Trim39-203ENSMUST00000113706 Ppp1r18Q8BQ30 594 aa21.94■■□□□ 1.1
Trim39-203ENSMUST00000113706 Abca8aQ8K442 1620 aa21.93■■□□□ 1.1
Trim39-203ENSMUST00000113706 Rock2P70336 1388 aa21.93■■□□□ 1.1
Trim39-203ENSMUST00000113706 Prdm2A2A7B5 1709 aaKnown RBP21.92■■□□□ 1.1
Trim39-203ENSMUST00000113706 Yeats2Q3TUF7 1407 aa21.91■■□□□ 1.1
Trim39-203ENSMUST00000113706 Setd1aE9PYH6 1716 aa21.91■■□□□ 1.1
Trim39-203ENSMUST00000113706 Stra8P70278 393 aa21.91■■□□□ 1.1
Trim39-203ENSMUST00000113706 Trpm1Q2TV84 1622 aa21.91■■□□□ 1.1
Trim39-203ENSMUST00000113706 ErbinQ80TH2 1402 aa21.9■■□□□ 1.1
Trim39-203ENSMUST00000113706 Aplp2Q06335 707 aa21.88■■□□□ 1.09
Trim39-203ENSMUST00000113706 Hecw2Q6I6G8 1578 aa21.88■■□□□ 1.09
Trim39-203ENSMUST00000113706 Tnnt3Q9QZ47 272 aa21.87■■□□□ 1.09
Trim39-203ENSMUST00000113706 Ehbp1l1Q99MS7 1716 aa21.87■■□□□ 1.09
Trim39-203ENSMUST00000113706 Adgrb3Q80ZF8 1522 aa21.86■■□□□ 1.09
Trim39-203ENSMUST00000113706 Akap12Q9WTQ5 1684 aa21.86■■□□□ 1.09
Trim39-203ENSMUST00000113706 Gm13695A2AK44 830 aa21.85■■□□□ 1.09
Trim39-203ENSMUST00000113706 Stk24Q99KH8 431 aa21.85■■□□□ 1.09
Trim39-203ENSMUST00000113706 Synj2Q9D2G5 1434 aa21.85■■□□□ 1.09
Trim39-203ENSMUST00000113706 Cfap65Q3V0B4 1847 aa21.85■■□□□ 1.09
Trim39-203ENSMUST00000113706 Cep152A2AUM9 1736 aaKnown RBP21.83■■□□□ 1.08
Trim39-203ENSMUST00000113706 Ino80Q6ZPV2 1559 aa21.82■■□□□ 1.08
Trim39-203ENSMUST00000113706 Zbtb4Q5F293 982 aa21.82■■□□□ 1.08
Retrieved 100 of 22,080 RNA–protein pairs in 70.3 ms