RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	SSZ1	P38788	538 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	YEL068C	P39977	110 aa		3.56	□□□□□ -1.84
USA1	YML029W	UTP25	P40498	721 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	POP1	P41812	875 aa		3.56	□□□□□ -1.84
USA1	YML029W	YFL066C	P43538	392 aa		3.56	□□□□□ -1.84
USA1	YML029W	CAK1	P43568	368 aa	Predicted RBP	3.56	□□□□□ -1.84
USA1	YML029W	IRC6	P43615	237 aa		3.56	□□□□□ -1.84
USA1	YML029W	BNA1	P47096	177 aa		3.56	□□□□□ -1.84
USA1	YML029W	IMD4	P50094	524 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	PFA5	Q03289	374 aa		3.56	□□□□□ -1.84
USA1	YML029W	PLM2	Q04383	521 aa		3.56	□□□□□ -1.84
USA1	YML029W	MCP1	Q12106	302 aa		3.56	□□□□□ -1.84
USA1	YML029W	SEN1	Q00416	2231 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	CDC9	P04819	755 aa		3.56	□□□□□ -1.84
USA1	YML029W	RPL20A	P0CX23	172 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	RPL20B	P0CX24	172 aa	Predicted RBP	3.56	□□□□□ -1.84
USA1	YML029W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.56	□□□□□ -1.84	not detected
USA1	YML029W	TOD6	P34219	525 aa		3.56	□□□□□ -1.84
USA1	YML029W	YHR097C	P38809	366 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	MLH1	P38920	769 aa		3.56	□□□□□ -1.84
USA1	YML029W	RTT105	P40063	208 aa		3.56	□□□□□ -1.84
USA1	YML029W	SOK1	P40317	901 aa		3.56	□□□□□ -1.84
USA1	YML029W	MET28	P40573	187 aa		3.56	□□□□□ -1.84
USA1	YML029W	YGL101W	P53144	215 aa		3.56	□□□□□ -1.84
USA1	YML029W	DAM1	P53267	343 aa		3.56	□□□□□ -1.84
USA1	YML029W	PDR16	P53860	351 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	YMR099C	Q03161	297 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	CGI121	Q03705	181 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	DET1	Q99288	334 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	DPM1	P14020	267 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	PCL2	P25693	308 aa		3.55	□□□□□ -1.84
USA1	YML029W	EHD3	P28817	500 aa		3.55	□□□□□ -1.84
USA1	YML029W	RPN2	P32565	945 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	SSE2	P32590	693 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	PTR2	P32901	601 aa		3.55	□□□□□ -1.84
USA1	YML029W	TIF3	P34167	436 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	GPX1	P36014	167 aa		3.55	□□□□□ -1.84
USA1	YML029W	MCM7	P38132	845 aa		3.55	□□□□□ -1.84
USA1	YML029W	ECM8	P38246	354 aa		3.55	□□□□□ -1.84
USA1	YML029W	FMP52	P40008	231 aa		3.55	□□□□□ -1.84
USA1	YML029W	SPO73	P40031	143 aa		3.55	□□□□□ -1.84
USA1	YML029W	YIL166C	P40445	542 aa		3.55	□□□□□ -1.84
USA1	YML029W	YIL165C	P40446	119 aa		3.55	□□□□□ -1.84
USA1	YML029W	MPH1	P40562	993 aa		3.55	□□□□□ -1.84
USA1	YML029W	EMC2	P47133	292 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	PRM8	P53174	237 aa		3.55	□□□□□ -1.84
USA1	YML029W	DBP6	P53734	629 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	RNH1	Q04740	348 aa		3.55	□□□□□ -1.84
USA1	YML029W	YOR376W	Q08900	122 aa		3.55	□□□□□ -1.84
USA1	YML029W	SET6	Q12529	373 aa		3.55	□□□□□ -1.84
USA1	YML029W	RPS21B	Q3E754	87 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	CDC36	P06100	191 aa	Predicted RBP	3.55	□□□□□ -1.84
USA1	YML029W	PET9	P18239	318 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	RHB1	P25378	209 aa		3.55	□□□□□ -1.84
USA1	YML029W	MXR2	P25566	168 aa		3.55	□□□□□ -1.84
USA1	YML029W	RPL5	P26321	297 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	ITR2	P30606	609 aa		3.55	□□□□□ -1.84
USA1	YML029W	SNC1	P31109	117 aa		3.55	□□□□□ -1.84
USA1	YML029W	DBF20	P32328	564 aa		3.55	□□□□□ -1.84
USA1	YML029W	VPH2	P32341	215 aa		3.55	□□□□□ -1.84
USA1	YML029W	TRS65	P32893	560 aa		3.55	□□□□□ -1.84
USA1	YML029W	YPT7	P32939	208 aa		3.55	□□□□□ -1.84
USA1	YML029W	SLC1	P33333	303 aa		3.55	□□□□□ -1.84
USA1	YML029W	MSN4	P33749	630 aa		3.55	□□□□□ -1.84
USA1	YML029W	ANS1	P38832	159 aa		3.55	□□□□□ -1.84
USA1	YML029W	NSG1	P38837	291 aa		3.55	□□□□□ -1.84
USA1	YML029W	TDA11	P38854	504 aa		3.55	□□□□□ -1.84
USA1	YML029W	COG3	P40094	801 aa		3.55	□□□□□ -1.84
USA1	YML029W	PRE6	P40303	254 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	YTA6	P40328	754 aa		3.55	□□□□□ -1.84
USA1	YML029W	NIT2	P47016	307 aa		3.55	□□□□□ -1.84
USA1	YML029W	IKS1	P47042	667 aa		3.55	□□□□□ -1.84
USA1	YML029W	YJR096W	P47137	282 aa		3.55	□□□□□ -1.84
USA1	YML029W	BPL1	P48445	690 aa	Predicted RBP	3.55	□□□□□ -1.84
USA1	YML029W	RBG2	P53295	368 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	MTQ1	P53944	314 aa		3.55	□□□□□ -1.84
USA1	YML029W	TPS1	Q00764	495 aa	Known RBP	3.55	□□□□□ -1.84
USA1	YML029W	SPO19	Q03029	223 aa		3.55	□□□□□ -1.84
USA1	YML029W	RNH202	Q05635	350 aa		3.55	□□□□□ -1.84
USA1	YML029W	SNT309	Q06091	175 aa	Predicted RBP	3.55	□□□□□ -1.84
USA1	YML029W	YPR127W	Q06494	345 aa		3.55	□□□□□ -1.84
USA1	YML029W	MLC2	Q06580	163 aa		3.55	□□□□□ -1.84
USA1	YML029W	SIA1	Q12212	622 aa		3.55	□□□□□ -1.84
USA1	YML029W	NFI1	Q12216	726 aa		3.55	□□□□□ -1.84
USA1	YML029W	YLR126C	Q12288	251 aa		3.55	□□□□□ -1.84
USA1	YML029W	PSF1	Q12488	208 aa		3.55	□□□□□ -1.84
USA1	YML029W	MTR10	Q99189	972 aa		3.55	□□□□□ -1.84
USA1	YML029W	MRPS28	P21771	286 aa		3.54	□□□□□ -1.84
USA1	YML029W	GPI12	P23797	304 aa		3.54	□□□□□ -1.84
USA1	YML029W	LHS1	P36016	881 aa		3.54	□□□□□ -1.84
USA1	YML029W	YJL193W	P39542	402 aa		3.54	□□□□□ -1.84
USA1	YML029W	MNN5	P46982	586 aa		3.54	□□□□□ -1.84
USA1	YML029W	BAT2	P47176	376 aa	Known RBP	3.54	□□□□□ -1.84
USA1	YML029W	VPS73	P53142	486 aa	Known RBP	3.54	□□□□□ -1.84
USA1	YML029W	TPC1	P53257	314 aa		3.54	□□□□□ -1.84
USA1	YML029W	CUZ1	P53899	274 aa		3.54	□□□□□ -1.84
USA1	YML029W	ABZ2	Q03266	374 aa		3.54	□□□□□ -1.84
USA1	YML029W	ATG17	Q06410	417 aa		3.54	□□□□□ -1.84
USA1	YML029W	COQ10	Q08058	207 aa		3.54	□□□□□ -1.84
USA1	YML029W	BRX1	Q08235	291 aa	Known RBP	3.54	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms