RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	MRPL9	P31334	269 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	ISF1	P32488	338 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	TKL2	P33315	681 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YNK1	P36010	153 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	POP7	P38291	140 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	GDI1	P39958	451 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	BUR6	P40096	142 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	COX16	P47081	118 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	STR3	P53101	465 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	TUB4	P53378	473 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YNR061C	P53747	219 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	SIW14	P53965	281 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YDR124W	Q04608	324 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YPR084W	Q06821	456 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	GPM2	Q12008	311 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	NBP2	Q12163	236 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YPL245W	Q12179	454 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	YLR046C	Q12253	270 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	RGT2	Q12300	763 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	MPD2	Q99316	277 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	CET1	O13297	549 aa	Predicted RBP	4.57	□□□□□ -1.68
CAF4	YKR036C	LEU4	P06208	619 aa	Known RBP	4.57	□□□□□ -1.68
CAF4	YKR036C	SPS4	P09937	338 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	YPK2	P18961	677 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	COX13	P32799	129 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	SSS1	P35179	80 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	SOL2	P37262	315 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	AGP2	P38090	596 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	DTR1	P38125	572 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	GND1	P38720	489 aa	Known RBP	4.57	□□□□□ -1.68
CAF4	YKR036C	MED6	P38782	295 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	PTC7	P38797	343 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	AIM46	P38885	310 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	SWM2	P40342	146 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	AYR1	P40471	297 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	LSB3	P43603	459 aa	Known RBP	4.57	□□□□□ -1.68
CAF4	YKR036C	IRC7	P43623	340 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	PMT4	P46971	762 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	TAX4	P47030	604 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	BUD9	P53226	547 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	RKM2	Q03942	479 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	RIF2	Q06208	395 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	ANT1	Q06497	328 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	SWC7	Q06707	132 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	GRC3	Q07845	632 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	PML1	Q07930	204 aa	Predicted RBP	4.57	□□□□□ -1.68
CAF4	YKR036C	YOR238W	Q08634	303 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	YPQ1	Q12010	308 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	EAF3	Q12432	401 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	SFG1	Q12507	346 aa		4.57	□□□□□ -1.68
CAF4	YKR036C	RPC40	P07703	335 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	RPL40A	P0CH08	128 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	RPL40B	P0CH09	128 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	MRP1	P10662	321 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	NAR1	P23503	491 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	YCP4	P25349	247 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	DCC1	P25559	380 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	OAC1	P32332	324 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	OAR1	P35731	278 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	ATG8	P38182	117 aa	RIP-Chip data	4.56	□□□□□ -1.68	not detected
CAF4	YKR036C	BIT2	P38346	545 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	SRP68	P38687	599 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	LSM5	P40089	93 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	LAS21	P40367	830 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	GAB1	P41733	394 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	HMS2	P47175	358 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	PKP2	P53170	491 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	HCH1	P53834	153 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	IGO1	P53897	168 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	GIP3	Q03016	1276 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	MRPS17	Q03246	237 aa	Predicted RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	RAD28	Q12021	506 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	YPR027C	Q12079	277 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	NDJ1	Q12366	352 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	RMD5	Q12508	421 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	BEM2	P39960	2167 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	AI1	P03875	834 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	HXK2	P04807	486 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	SIR2	P06700	562 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	HOM3	P10869	527 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	AAT2	P23542	418 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	KRE6	P32486	720 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	TCM62	P38228	572 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	PEX32	P38292	413 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	YMR262W	P38430	313 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	MDM31	P38880	579 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	AIM10	P39965	576 aa	Known RBP	4.56	□□□□□ -1.68
CAF4	YKR036C	YER010C	P40011	234 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	SLX8	P40072	274 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	RRG9	P40156	214 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	POG1	P40473	351 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	FKH2	P41813	862 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	PHO23	P50947	330 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	COS10	P52924	374 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	MTL1	P53214	551 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	TMN2	Q04562	672 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	SPR28	Q04921	423 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	BSP1	Q06604	576 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	YFT2	Q06676	274 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	PLB3	Q08108	686 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 25.2 ms