RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HTTP42858 3142 aa33.74■■■□□ 2.99
CTCF-203ENST00000566078 CENPFP49454 3210 aa33.74■■■□□ 2.99
CTCF-203ENST00000566078 UBE4BO95155 1302 aa33.73■■■□□ 2.99
CTCF-203ENST00000566078 MAPTP10636 758 aaKnown RBP33.73■■■□□ 2.99
CTCF-203ENST00000566078 DMP1Q13316 513 aaPredicted RBP33.73■■■□□ 2.99
CTCF-203ENST00000566078 BMT2Q1RMZ1 405 aa33.73■■■□□ 2.99
CTCF-203ENST00000566078 ZNF484Q5JVG2 852 aa33.73■■■□□ 2.99
CTCF-203ENST00000566078 BSNDQ8WZ55 320 aa33.73■■■□□ 2.99
CTCF-203ENST00000566078 WBP1LQ9NX94 342 aa33.73■■■□□ 2.99
CTCF-203ENST00000566078 TRIM17Q9Y577 477 aa33.73■■■□□ 2.99
CTCF-203ENST00000566078 MYL3P08590 195 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 RARBP10826 455 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 GJA9P57773 515 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 RTP1P59025 263 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 ZC2HC1CQ53FD0 456 aaPredicted RBP33.72■■■□□ 2.99
CTCF-203ENST00000566078 ZNF507Q8TCN5 953 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 TSG101Q99816 390 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 C17orf75Q9HAS0 396 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 COL1A2P08123 1366 aa33.72■■■□□ 2.99
CTCF-203ENST00000566078 F2P00734 622 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 C6orf222P0C671 652 aaPredicted RBP33.71■■■□□ 2.99
CTCF-203ENST00000566078 ATP1A3P13637 1013 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 INSRRP14616 1297 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 MAP3K21Q5TCX8 1036 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 EXOC8Q8IYI6 725 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 SLAIN1Q8ND83 568 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 DUSP9Q99956 384 aaKnown RBP33.71■■■□□ 2.99
CTCF-203ENST00000566078 ZNF18P17022 549 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 NCKAP1LP55160 1127 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 IGBP1P78318 339 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 LRRC63Q05C16 580 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 IFT74Q96LB3 600 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 UPF3AQ9H1J1 476 aaKnown RBP33.71■■■□□ 2.99
CTCF-203ENST00000566078 KCTD10Q9H3F6 313 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 PCDHB13Q9Y5F0 798 aa33.71■■■□□ 2.99
CTCF-203ENST00000566078 MYADML2A6NDP7 307 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 CCDC169A6NNP5 214 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 HOXD13P35453 343 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 NPTX2P47972 431 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 SARM1Q6SZW1 724 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 CSGALNACT2Q8N6G5 542 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 SLC17A8Q8NDX2 589 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 JPH2Q9BR39 696 aaPredicted RBP33.7■■■□□ 2.99
CTCF-203ENST00000566078 SPC25Q9HBM1 224 aa33.7■■■□□ 2.99
CTCF-203ENST00000566078 TRIP12Q14669 1992 aaPredicted RBP33.7■■■□□ 2.99
CTCF-203ENST00000566078 CEP350Q5VT06 3117 aa33.7■■■□□ 2.98
CTCF-203ENST00000566078 SLC16A4O15374 487 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 GAS2O43903 313 aaKnown RBP33.69■■■□□ 2.98
CTCF-203ENST00000566078 PPP1R37O75864 691 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 SMTNP53814 917 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 ALCAMQ13740 583 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 KNOP1Q1ED39 458 aaKnown RBP33.69■■■□□ 2.98
CTCF-203ENST00000566078 ZCWPW2Q504Y3 356 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 CDKAL1Q5VV42 579 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 KAT2BQ92831 832 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 KMT5AQ9NQR1 393 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 ZMYM2Q9UBW7 1377 aa33.69■■■□□ 2.98
CTCF-203ENST00000566078 INHAP05111 366 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 ARL2P36404 184 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 KCNA1Q09470 495 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 PPFIA1Q13136 1202 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 KSR1Q8IVT5 923 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 ASAP3Q8TDY4 903 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 SPIRE2Q8WWL2 714 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 STRA6Q9BX79 667 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 SUGCTQ9HAC7 445 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 PTCH2Q9Y6C5 1203 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 SCN10AQ9Y5Y9 1956 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 IGKV6-21A0A0C4DH24 114 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 C22orf31O95567 290 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 ADCY5O95622 1261 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 PGK1P00558 417 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 CDK11BP21127 795 aaKnown RBP33.68■■■□□ 2.98
CTCF-203ENST00000566078 CHMP4BP1P59074 171 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 KIAA0753Q2KHM9 967 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 HAUS6Q7Z4H7 955 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 LRRC71Q8N4P6 559 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 TCP11Q8WWU5 503 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 KIFC3Q9BVG8 833 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 SRRTQ9BXP5 876 aaKnown RBP33.68■■■□□ 2.98
CTCF-203ENST00000566078 TRIM5Q9C035 493 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 ST6GALNAC4Q9H4F1 302 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 XPNPEP3Q9NQH7 507 aa33.68■■■□□ 2.98
CTCF-203ENST00000566078 GLRA2P23416 452 aa33.67■■■□□ 2.98
CTCF-203ENST00000566078 GRK4P32298 578 aa33.67■■■□□ 2.98
CTCF-203ENST00000566078 DRP2Q13474 957 aa33.67■■■□□ 2.98
CTCF-203ENST00000566078 MFSD10Q14728 455 aa33.67■■■□□ 2.98
CTCF-203ENST00000566078 FOXR2Q6PJQ5 311 aa33.67■■■□□ 2.98
CTCF-203ENST00000566078 NOC3LQ8WTT2 800 aaKnown RBP33.67■■■□□ 2.98
CTCF-203ENST00000566078 THAP9Q9H5L6 903 aa33.67■■■□□ 2.98
CTCF-203ENST00000566078 PSEN2P49810 448 aa33.66■■■□□ 2.98
CTCF-203ENST00000566078 GRIK4Q16099 956 aa33.66■■■□□ 2.98
CTCF-203ENST00000566078 GNASQ5JWF2 1037 aa33.66■■■□□ 2.98
CTCF-203ENST00000566078 IER5Q5VY09 327 aa33.66■■■□□ 2.98
CTCF-203ENST00000566078 ZBTB10Q96DT7 871 aa33.66■■■□□ 2.98
CTCF-203ENST00000566078 PURAQ00577 322 aaKnown RBP33.65■■■□□ 2.98
CTCF-203ENST00000566078 FANCCQ00597 558 aa33.65■■■□□ 2.98
CTCF-203ENST00000566078 PPP2R5AQ15172 486 aa33.65■■■□□ 2.98
CTCF-203ENST00000566078 PPP4R3CPQ6ZMV5 832 aa33.65■■■□□ 2.98
CTCF-203ENST00000566078 DNAJC5GQ8N7S2 189 aa33.65■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms