RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-223ENST00000475146 RHPN2Q8IUC4 686 aa26.84■■□□□ 1.89
CPNE1-223ENST00000475146 EXOC8Q8IYI6 725 aa26.84■■□□□ 1.89
CPNE1-223ENST00000475146 GDPD5Q8WTR4 605 aa26.84■■□□□ 1.89
CPNE1-223ENST00000475146 GCOM2Q9BZD3 368 aaPredicted RBP26.84■■□□□ 1.89
CPNE1-223ENST00000475146 C1orf112Q9NSG2 853 aa26.84■■□□□ 1.89
CPNE1-223ENST00000475146 ADGRA3Q8IWK6 1321 aa26.84■■□□□ 1.89
CPNE1-223ENST00000475146 CDH23Q9H251 3354 aa26.83■■□□□ 1.89
CPNE1-223ENST00000475146 SARSP49591 514 aaKnown RBP26.83■■□□□ 1.89
CPNE1-223ENST00000475146 GRB10Q13322 594 aa26.83■■□□□ 1.89
CPNE1-223ENST00000475146 EMC2Q15006 297 aa26.83■■□□□ 1.89
CPNE1-223ENST00000475146 FIBCD1Q8N539 461 aa26.83■■□□□ 1.89
CPNE1-223ENST00000475146 NLRP4Q96MN2 994 aa26.83■■□□□ 1.89
CPNE1-223ENST00000475146 DHX33Q9H6R0 707 aaKnown RBP26.83■■□□□ 1.89
CPNE1-223ENST00000475146 PCDHB6Q9Y5E3 794 aa26.83■■□□□ 1.89
CPNE1-223ENST00000475146 CHD9Q3L8U1 2897 aa26.83■■□□□ 1.88
CPNE1-223ENST00000475146 COL4A4P53420 1690 aaPredicted RBP26.82■■□□□ 1.88
CPNE1-223ENST00000475146 COL4A6Q14031 1691 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 A0A087WZ62 844 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 LYPLA2O95372 231 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 TOB1P50616 345 aaPredicted RBP26.82■■□□□ 1.88
CPNE1-223ENST00000475146 CCDC85BQ15834 202 aaPredicted RBP26.82■■□□□ 1.88
CPNE1-223ENST00000475146 ZNF410Q86VK4 478 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 FBXO22Q8NEZ5 403 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 ERMNQ8TAM6 284 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 TMEM143Q96AN5 459 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 FDXACB1Q9BRP7 624 aaPredicted RBP26.82■■□□□ 1.88
CPNE1-223ENST00000475146 RGS18Q9NS28 235 aa26.82■■□□□ 1.88
CPNE1-223ENST00000475146 DGKIO75912 1065 aa26.81■■□□□ 1.88
CPNE1-223ENST00000475146 FGFR4P22455 802 aa26.81■■□□□ 1.88
CPNE1-223ENST00000475146 BTG3Q14201 252 aaPredicted RBP26.81■■□□□ 1.88
CPNE1-223ENST00000475146 LARP1BQ659C4 914 aaKnown RBP26.81■■□□□ 1.88
CPNE1-223ENST00000475146 SLC24A5Q71RS6 500 aa26.81■■□□□ 1.88
CPNE1-223ENST00000475146 KSR1Q8IVT5 923 aa26.81■■□□□ 1.88
CPNE1-223ENST00000475146 PSPC1Q8WXF1 523 aaKnown RBP26.81■■□□□ 1.88
CPNE1-223ENST00000475146 SAMD11Q96NU1 681 aa26.81■■□□□ 1.88
CPNE1-223ENST00000475146 ANKEF1Q9NU02 776 aa26.81■■□□□ 1.88
CPNE1-223ENST00000475146 PCDHB7Q9Y5E2 793 aa26.81■■□□□ 1.88
CPNE1-223ENST00000475146 COL6A3P12111 3177 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 GAS2O43903 313 aaKnown RBP26.8■■□□□ 1.88
CPNE1-223ENST00000475146 CSDE1O75534 798 aaKnown RBP26.8■■□□□ 1.88
CPNE1-223ENST00000475146 ZSCAN20P17040 1043 aaPredicted RBP26.8■■□□□ 1.88
CPNE1-223ENST00000475146 PTGDRQ13258 359 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 CUL4AQ13619 759 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 EPC2Q52LR7 807 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 PIGOQ8TEQ8 1089 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 TCP11Q8WWU5 503 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 MTRQ99707 1265 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 RC3H2Q9HBD1 1191 aaKnown RBP26.8■■□□□ 1.88
CPNE1-223ENST00000475146 TUFT1Q9NNX1 390 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 COL4A3BPQ9Y5P4 624 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 MTCH2Q9Y6C9 303 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 ARID2Q68CP9 1835 aa26.8■■□□□ 1.88
CPNE1-223ENST00000475146 C9IYK1 514 aa26.79■■□□□ 1.88
CPNE1-223ENST00000475146 LPXNO60711 386 aa26.79■■□□□ 1.88
CPNE1-223ENST00000475146 DSC3Q14574 896 aa26.79■■□□□ 1.88
CPNE1-223ENST00000475146 PAN2Q504Q3 1202 aaKnown RBP26.79■■□□□ 1.88
CPNE1-223ENST00000475146 RILPL1Q5EBL4 403 aa26.79■■□□□ 1.88
CPNE1-223ENST00000475146 CATSPER3Q86XQ3 398 aa26.79■■□□□ 1.88
CPNE1-223ENST00000475146 PHF6Q8IWS0 365 aaKnown RBP eCLIP26.79■■□□□ 1.88
CPNE1-223ENST00000475146 TMEM192Q8IY95 271 aa26.79■■□□□ 1.88
CPNE1-223ENST00000475146 C4orf32Q8N8J7 132 aa26.79■■□□□ 1.88
CPNE1-223ENST00000475146 ZNF689Q96CS4 500 aaPredicted RBP26.79■■□□□ 1.88
CPNE1-223ENST00000475146 RNF216Q9NWF9 866 aaPredicted RBP26.79■■□□□ 1.88
CPNE1-223ENST00000475146 A0A087WWV3 80 aa26.78■■□□□ 1.88
CPNE1-223ENST00000475146 MED24O75448 989 aa26.78■■□□□ 1.88
CPNE1-223ENST00000475146 SPATA31C1P0DKV0 1188 aa26.78■■□□□ 1.88
CPNE1-223ENST00000475146 SFPQP23246 707 aaKnown RBP eCLIP26.78■■□□□ 1.888e-7■■□□□ 11.5
CPNE1-223ENST00000475146 GATMP50440 423 aa26.78■■□□□ 1.88
CPNE1-223ENST00000475146 CMTR2Q8IYT2 770 aaKnown RBP26.78■■□□□ 1.88
CPNE1-223ENST00000475146 CRIPAKQ8N1N5 446 aa26.78■■□□□ 1.88
CPNE1-223ENST00000475146 INO80BQ9C086 356 aaPredicted RBP26.78■■□□□ 1.88
CPNE1-223ENST00000475146 ATP6V0A4Q9HBG4 840 aa26.78■■□□□ 1.88
CPNE1-223ENST00000475146 POU3F3P20264 500 aaPredicted RBP26.77■■□□□ 1.88
CPNE1-223ENST00000475146 CTNNB1P35222 781 aa26.77■■□□□ 1.88
CPNE1-223ENST00000475146 RARRES1P49788 294 aa26.77■■□□□ 1.88
CPNE1-223ENST00000475146 FXR2P51116 673 aaKnown RBP eCLIP26.77■■□□□ 1.88
CPNE1-223ENST00000475146 HAUS3Q68CZ6 603 aa26.77■■□□□ 1.88
CPNE1-223ENST00000475146 PRPF31Q8WWY3 499 aaKnown RBP26.77■■□□□ 1.88
CPNE1-223ENST00000475146 POLR3CQ9BUI4 534 aaPredicted RBP26.77■■□□□ 1.88
CPNE1-223ENST00000475146 EIF4ENIF1Q9NRA8 985 aaKnown RBP26.77■■□□□ 1.88
CPNE1-223ENST00000475146 CHD7Q9P2D1 2997 aa26.77■■□□□ 1.88
CPNE1-223ENST00000475146 LAD1O00515 517 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 DGAT1O75907 488 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 SRGAP2CP0DJJ0 459 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 LAMTOR4Q0VGL1 99 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 POTEGQ6S5H5 508 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 RAB34Q9BZG1 259 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 XPNPEP1Q9NQW7 623 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 RWDD3Q9Y3V2 267 aa26.76■■□□□ 1.87
CPNE1-223ENST00000475146 NLRC5Q86WI3 1866 aa26.75■■□□□ 1.87
CPNE1-223ENST00000475146 USO1O60763 962 aaKnown RBP26.75■■□□□ 1.87
CPNE1-223ENST00000475146 XRCC6P12956 609 aaKnown RBP eCLIP26.75■■□□□ 1.87
CPNE1-223ENST00000475146 RPA1P27694 616 aa26.75■■□□□ 1.87
CPNE1-223ENST00000475146 CCT6AP40227 531 aaKnown RBP26.75■■□□□ 1.87
CPNE1-223ENST00000475146 CATSPER4Q7RTX7 472 aa26.75■■□□□ 1.87
CPNE1-223ENST00000475146 FERMT3Q86UX7 667 aa26.75■■□□□ 1.87
CPNE1-223ENST00000475146 NACC1Q96RE7 527 aa26.75■■□□□ 1.87
CPNE1-223ENST00000475146 TMEM161AQ9NX61 479 aa26.75■■□□□ 1.87
CPNE1-223ENST00000475146 LRWD1Q9UFC0 647 aa26.75■■□□□ 1.87
CPNE1-223ENST00000475146 MRPL42Q9Y6G3 142 aaKnown RBP26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms