RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 BRD8Q9H0E9 1235 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 POLR3EQ9NVU0 708 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 DNM3Q9UQ16 869 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 FOSP01100 380 aaPredicted RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 KRT6AP02538 564 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 KRT6BP04259 564 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 HMOX2P30519 316 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 KRT6CP48668 564 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 PMS2P54278 862 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 TUBA3CQ13748 450 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 PIGOQ8TEQ8 1089 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 ZNF594Q96JF6 807 aaPredicted RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 SNX25Q9H3E2 840 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 SMYD3Q9H7B4 428 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 NCOA5Q9HCD5 579 aaKnown RBP14.19□□□□□ -0.14
USP40-208ENST00000450966 RABGEF1Q9UJ41 708 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 ASAP1Q9ULH1 1129 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 WDR37Q9Y2I8 494 aa14.19□□□□□ -0.14
USP40-208ENST00000450966 DAB2P98082 770 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 CRELD2Q6UXH1 353 aaPredicted RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 NACA2Q9H009 215 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 PKD2L2Q9NZM6 624 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 TBK1Q9UHD2 729 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 PTCH1Q13635 1447 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 TULP4Q9NRJ4 1543 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 PHF20L1A8MW92 1017 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 OCM2P0CE71 109 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 OCMP0CE72 109 aaPredicted RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 TUBA1BP68363 451 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 FRA10AC1Q70Z53 315 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 TUBA1AQ71U36 451 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 BTN2A1Q7KYR7 527 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 NARFQ9UHQ1 456 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 ABLIM1O14639 778 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 CBFA2T3O75081 653 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 GLI2P10070 1586 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 BTDP43251 543 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 PRKG1Q13976 671 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 SH2D3CQ8N5H7 860 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 TRPC7Q9HCX4 862 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 APOBEC2Q9Y235 224 aaKnown RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 KDM3AQ9Y4C1 1321 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 SMAPO00193 183 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 S100A5P33763 92 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 PPARAQ07869 468 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 FAM160B1Q5W0V3 765 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 YTHDF3Q7Z739 585 aaKnown RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 PALD1Q9ULE6 856 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 COMMD3-BMI1R4GMX3 469 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 USP17L3A6NCW0 530 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 USP17L4A6NCW7 530 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 P4HA1P13674 534 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 UBE3CQ15386 1083 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 USP17L1Q7RTZ2 530 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 ADAT2Q7Z6V5 191 aaKnown RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 CPXCR1Q8N123 301 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 NMD3Q96D46 503 aaKnown RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 ZBTB1Q9Y2K1 713 aa14.18□□□□□ -0.14
USP40-208ENST00000450966 NOC2LQ9Y3T9 749 aaKnown RBP14.18□□□□□ -0.14
USP40-208ENST00000450966 ERCC6L2Q5T890 1561 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 KLHL33A6NCF5 533 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 hCG_1984214I3L0E3 225 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 ACTN1P12814 892 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 ZNF827Q17R98 1081 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 KSR1Q8IVT5 923 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 ZNF713Q8N859 430 aaPredicted RBP14.17□□□□□ -0.14
USP40-208ENST00000450966 LMTK2Q8IWU2 1503 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 CFAP69A5D8W1 941 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 C16orf96A6NNT2 1141 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 CFLARO15519 480 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 PDE8BO95263 885 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 NCF2P19878 526 aaPredicted RBP14.17□□□□□ -0.14
USP40-208ENST00000450966 ABCB5Q2M3G0 1257 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 ODR4Q5SWX8 454 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 ARMCX5Q6P1M9 558 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 COPRSQ9NQ92 184 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 CFAP65Q6ZU64 1925 aaKnown RBP14.17□□□□□ -0.14
USP40-208ENST00000450966 CARMIL3Q8ND23 1372 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 POLR2MP0CAP2 368 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 AP5M1Q9H0R1 490 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 RASA4BC9J798 803 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 RASA4O43374 803 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 BRAFP15056 766 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 ZAP70P43403 619 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 SEC24CP53992 1094 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 GPATCH4Q5T3I0 446 aaKnown RBP14.17□□□□□ -0.14
USP40-208ENST00000450966 CAPN12Q6ZSI9 719 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 SLC17A8Q8NDX2 589 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 ZFYVE19Q96K21 471 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 RNPC3Q96LT9 517 aaKnown RBP14.17□□□□□ -0.14
USP40-208ENST00000450966 TUBGCP2Q9BSJ2 902 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 BLZF1Q9H2G9 400 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 MLXIPQ9HAP2 919 aa14.17□□□□□ -0.14
USP40-208ENST00000450966 IQANK1A0A1B0GTG1 560 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 ATP6V1G1O75348 118 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 EPHB1P54762 984 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 ARHGEF16Q5VV41 709 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CCDC103Q8IW40 242 aa14.16□□□□□ -0.14
USP40-208ENST00000450966 CDKL2Q92772 493 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms