RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 TCP11Q8WWU5 503 aa25.42■■□□□ 1.66
CPSF4-204ENST00000436336 FGFBP2Q9BYJ0 223 aa25.42■■□□□ 1.66
CPSF4-204ENST00000436336 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.42■■□□□ 1.669e-6■■□□□ 13.2
CPSF4-204ENST00000436336 POLR3FQ9H1D9 316 aaPredicted RBP25.42■■□□□ 1.66
CPSF4-204ENST00000436336 KCNG1Q9UIX4 513 aa25.42■■□□□ 1.66
CPSF4-204ENST00000436336 RRN3P2A6NIE6 340 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 C22orf31O95567 290 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 ARL2P36404 184 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 SOX10P56693 466 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 IGBP1P78318 339 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 PAK1Q13153 545 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 LRRC41Q15345 812 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 GRIK4Q16099 956 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 LHX8Q68G74 356 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 CCSAPQ6IQ19 270 aaPredicted RBP25.41■■□□□ 1.66
CPSF4-204ENST00000436336 DHX40Q8IX18 779 aaKnown RBP25.41■■□□□ 1.66
CPSF4-204ENST00000436336 RETREG2Q8NC44 543 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 SLC17A8Q8NDX2 589 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 GLIS3Q8NEA6 775 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 CTNND2Q9UQB3 1225 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 NRCAMQ92823 1304 aa25.41■■□□□ 1.66
CPSF4-204ENST00000436336 SMTNL1A8MU46 457 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 BECN2A8MW95 431 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 IKBKBO14920 756 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 LBX1P52954 281 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 PEX3P56589 373 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 DMP1Q13316 513 aaPredicted RBP25.4■■□□□ 1.66
CPSF4-204ENST00000436336 IER5Q5VY09 327 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 STXBP4Q6ZWJ1 553 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 EPM2AIP1Q7L775 607 aaPredicted RBP25.4■■□□□ 1.66
CPSF4-204ENST00000436336 ZNF720Q7Z2F6 126 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 LUZP1Q86V48 1076 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 AOPEPQ8N6M6 819 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 NELFBQ8WX92 580 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 TMEM143Q96AN5 459 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 IFT74Q96LB3 600 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 RWDD2AQ9UIY3 292 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 TRIP12Q14669 1992 aaPredicted RBP25.4■■□□□ 1.66
CPSF4-204ENST00000436336 EIF3DO15371 548 aaKnown RBP eCLIP25.4■■□□□ 1.66
CPSF4-204ENST00000436336 GCNT3O95395 438 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 SMIM10L2AP0DMW4 78 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 SMIM10L2BP0DMW5 78 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 KLRC1P26715 233 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 NMT1P30419 496 aaKnown RBP25.4■■□□□ 1.66
CPSF4-204ENST00000436336 CASP5P51878 434 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 MYL5Q02045 173 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 KCNA10Q16322 511 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 ENOX1Q8TC92 643 aaKnown RBP25.4■■□□□ 1.66
CPSF4-204ENST00000436336 SCFD1Q8WVM8 642 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 SPIRE2Q8WWL2 714 aa25.4■■□□□ 1.66
CPSF4-204ENST00000436336 CENPFP49454 3210 aa25.39■■□□□ 1.66
CPSF4-204ENST00000436336 SIP14410 1827 aa25.39■■□□□ 1.66
CPSF4-204ENST00000436336 ASGR1P07306 291 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 SMTNP53814 917 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 NCKAP1LP55160 1127 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 CHMP4BP1P59074 171 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 ALCAMQ13740 583 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 EFCAB12Q6NXP0 572 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 MTHFD1LQ6UB35 978 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 CXCL17Q6UXB2 119 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 NTPCRQ9BSD7 190 aaKnown RBP25.39■■□□□ 1.65
CPSF4-204ENST00000436336 ST6GALNAC4Q9H4F1 302 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 SUGCTQ9HAC7 445 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 GRPEL1Q9HAV7 217 aa25.39■■□□□ 1.65
CPSF4-204ENST00000436336 UBE4BO95155 1302 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 MYBP10242 640 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 CCNE1P24864 410 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 PPP2R5AQ15172 486 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 BMT2Q1RMZ1 405 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 L1TD1Q5T7N2 865 aaKnown RBP25.38■■□□□ 1.65
CPSF4-204ENST00000436336 FBXO46Q6PJ61 603 aaPredicted RBP25.38■■□□□ 1.65
CPSF4-204ENST00000436336 ZNF507Q8TCN5 953 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 BSNDQ8WZ55 320 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 UNC93B1Q9H1C4 597 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 SETD4Q9NVD3 440 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 PCDHB13Q9Y5F0 798 aa25.38■■□□□ 1.65
CPSF4-204ENST00000436336 GOLGA6L19H0YKK7 550 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 K7ENM7 598 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 MYCNP04198 464 aaPredicted RBP25.37■■□□□ 1.65
CPSF4-204ENST00000436336 GLRA2P23416 452 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 NPTX2P47972 431 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 DNM2P50570 870 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 MKRN4PQ13434 485 aaPredicted RBP25.37■■□□□ 1.65
CPSF4-204ENST00000436336 NCAPHQ15003 741 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 PKN2Q16513 984 aaKnown RBP25.37■■□□□ 1.65
CPSF4-204ENST00000436336 UVSSAQ2YD98 709 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 MARCH8Q5T0T0 291 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 CENPPQ6IPU0 288 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 LRRC71Q8N4P6 559 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 LMBR1Q8WVP7 490 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 P2RX5Q93086 422 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 MED15Q96RN5 788 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 STRA6Q9BX79 667 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 KMT5AQ9NQR1 393 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 BICDL2A1A5D9 508 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 PPP1R37O75864 691 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 NAMPTP43490 491 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 STX17P56962 302 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 DRP2Q13474 957 aa25.37■■□□□ 1.65
CPSF4-204ENST00000436336 MXD4Q14582 209 aaPredicted RBP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms