RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 SIP14410 1827 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 DDX11L8A8MPP1 907 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 C9IYK1 514 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 TNFRSF10AO00220 468 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 MAFO75444 373 aaPredicted RBP16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 VTNP04004 478 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 CTNNB1P35222 781 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 SAFBQ15424 915 aaKnown RBP eCLIP16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 CSPP1Q1MSJ5 1256 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 TMEM266Q2M3C6 531 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 KRT40Q6A162 431 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 C4orf19Q8IY42 314 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 BANK1Q8NDB2 785 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 TMEM40Q8WWA1 233 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 OSMRQ99650 979 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 CHST12Q9NRB3 414 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 SH2B1Q9NRF2 756 aaPredicted RBP16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 TMEM161AQ9NX61 479 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 PCDHA12Q9UN75 941 aa16.31■□□□□ 0.2
NIF3L1-205ENST00000409588 SLC37A4O43826 429 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 GAS2O43903 313 aaKnown RBP16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 STBD1O95210 358 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 LINC00271P0C7V0 271 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 GPC3P51654 580 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 CLCN3P51790 818 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 UGCGQ16739 394 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 ZNF410Q86VK4 478 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 FAM228AQ86W67 206 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 OXER1Q8TDS5 423 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 ADAMTS19Q8TE59 1207 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 SLC7A3Q8WY07 619 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 HAS1Q92839 578 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 TNFRSF25Q93038 417 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 GJA10Q969M2 543 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 PPP2R3CQ969Q6 453 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 CEP89Q96ST8 783 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 GCOM2Q9BZD3 368 aaPredicted RBP16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 NSUN3Q9H649 340 aaKnown RBP16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 ATP6V0A4Q9HBG4 840 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 DACT1Q9NYF0 836 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 SEPT9Q9UHD8 586 aaPredicted RBP16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 VAV3Q9UKW4 847 aa16.3■□□□□ 0.2
NIF3L1-205ENST00000409588 CARNS1A5YM72 827 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 ASAP2O43150 1006 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 EOMESO95936 686 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 DARSP14868 501 aaKnown RBP16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 RFC5P40937 340 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 HMGN5P82970 282 aaKnown RBP16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 DSC3Q14574 896 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 MTERF2Q49AM1 385 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 ANO5Q75V66 913 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 LRRC71Q8N4P6 559 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 UHRF1Q96T88 793 aaPredicted RBP16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 TRAIPQ9BWF2 469 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 ZSWIM4Q9H7M6 989 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 CYP26B1Q9NR63 512 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 PCDHB12Q9Y5F1 795 aa16.29■□□□□ 0.2
NIF3L1-205ENST00000409588 XIRP2A4UGR9 3374 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 EVPLQ92817 2033 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 BTBD18B2RXH4 712 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 EML1O00423 815 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 PYGBP11216 843 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 SKIP12755 728 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 TFF2Q03403 129 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 UBE3AQ05086 875 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 NR5A1Q13285 461 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 ORC2Q13416 577 aaPredicted RBP16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 LEXMQ3ZCV2 418 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 DIS3L2Q8IYB7 885 aaKnown RBP16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 NEK9Q8TD19 979 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 NLRP7Q8WX94 980 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 SCLT1Q96NL6 688 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 GJB4Q9NTQ9 266 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 SUCLA2Q9P2R7 463 aaPredicted RBP16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 PLAGL2Q9UPG8 496 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 FAM50BQ9Y247 325 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 REV3LO60673 3130 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 RALGAPA2Q2PPJ7 1873 aa16.28■□□□□ 0.2
NIF3L1-205ENST00000409588 A0A0U1RQF3 1178 aa16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 FSD2A1L4K1 749 aa16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 MGEA5O60502 916 aa16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 LARGE1O95461 756 aa16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 XRCC6P12956 609 aaKnown RBP eCLIP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 SFPQP23246 707 aaKnown RBP eCLIP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 COL19A1Q14993 1142 aa16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 PCBP1Q15365 356 aaKnown RBP eCLIP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 PDE12Q6L8Q7 609 aaKnown RBP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 TCP11Q8WWU5 503 aa16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 PABPC5Q96DU9 382 aaKnown RBP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 CEP170P1Q96L14 293 aa16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 FOXP1Q9H334 677 aaPredicted RBP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 UBE2ZQ9H832 354 aaPredicted RBP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 MRPL42Q9Y6G3 142 aaKnown RBP16.27■□□□□ 0.2
NIF3L1-205ENST00000409588 LYPLA2O95372 231 aa16.26■□□□□ 0.19
NIF3L1-205ENST00000409588 YWHABP31946 246 aaKnown RBP16.26■□□□□ 0.19
NIF3L1-205ENST00000409588 RBM25P49756 843 aaKnown RBP16.26■□□□□ 0.19
NIF3L1-205ENST00000409588 SPIRE1Q08AE8 756 aa16.26■□□□□ 0.19
NIF3L1-205ENST00000409588 CALCRLQ16602 461 aa16.26■□□□□ 0.19
NIF3L1-205ENST00000409588 EARS2Q5JPH6 523 aaKnown RBP16.26■□□□□ 0.19
NIF3L1-205ENST00000409588 HSD17B14Q9BPX1 270 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms