RNA–Protein interactions for RNA: YOR075W

UFE1, Transcript of t-SNARE protein required for retrograde vesicular traffic, yeast

Gene UFE1, Length 1,041 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UFE1	YOR075W	EOS1	P53938	366 aa		3.04	□□□□□ -1.92
UFE1	YOR075W	FSH2	Q05015	223 aa		3.04	□□□□□ -1.92
UFE1	YOR075W	YLR177W	Q06251	628 aa		3.04	□□□□□ -1.92
UFE1	YOR075W	ATP16	Q12165	160 aa		3.04	□□□□□ -1.92
UFE1	YOR075W	RPL23A	P0CX41	137 aa	Known RBP	3.03	□□□□□ -1.92
UFE1	YOR075W	RPL23B	P0CX42	137 aa	Known RBP	3.03	□□□□□ -1.92
UFE1	YOR075W	SCH9	P11792	824 aa	Known RBP	3.03	□□□□□ -1.92
UFE1	YOR075W	UNG1	P12887	359 aa		3.03	□□□□□ -1.92
UFE1	YOR075W	DBR1	P24309	405 aa	Known RBP	3.03	□□□□□ -1.92
UFE1	YOR075W	FAA1	P30624	700 aa	Known RBP	3.03	□□□□□ -1.92
UFE1	YOR075W	ZUO1	P32527	433 aa	Known RBP	3.03	□□□□□ -1.92
UFE1	YOR075W	WSC4	P38739	605 aa		3.03	□□□□□ -1.92
UFE1	YOR075W	YHR182W	P38870	785 aa		3.03	□□□□□ -1.92
UFE1	YOR075W	SNL1	P40548	159 aa		3.03	□□□□□ -1.92
UFE1	YOR075W	SEH1	P53011	349 aa	Known RBP	3.03	□□□□□ -1.92
UFE1	YOR075W	YLH47	Q06493	454 aa		3.03	□□□□□ -1.92
UFE1	YOR075W	LDB17	Q12342	491 aa		3.03	□□□□□ -1.92
UFE1	YOR075W	YOR338W	Q99326	363 aa		3.03	□□□□□ -1.92
UFE1	YOR075W	ASP3-2	P0CX77	362 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	ASP3-3	P0CX78	362 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	ASP3-4	P0CX79	362 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	ASP3-1	P0CZ17	362 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	UBA1	P22515	1024 aa	Known RBP	3.02	□□□□□ -1.93
UFE1	YOR075W	TOA1	P32773	286 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	COS9	P36034	407 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	CHL4	P38907	458 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	YFL012W	P43580	148 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	FLC3	P53121	802 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	YNR068C	P53754	272 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	RPL21A	Q02753	160 aa	Known RBP	3.02	□□□□□ -1.93
UFE1	YOR075W	RNY1	Q02933	434 aa	Known RBP	3.02	□□□□□ -1.93
UFE1	YOR075W	YDR115W	Q04598	105 aa		3.02	□□□□□ -1.93
UFE1	YOR075W	RPL21B	Q12672	160 aa	Known RBP	3.02	□□□□□ -1.93
UFE1	YOR075W	DAP2	P18962	818 aa		3.01	□□□□□ -1.93
UFE1	YOR075W	MIR1	P23641	311 aa	Known RBP	3.01	□□□□□ -1.93
UFE1	YOR075W	RNH201	P53942	307 aa		3.01	□□□□□ -1.93
UFE1	YOR075W	YPL107W	Q02873	248 aa		3.01	□□□□□ -1.93
UFE1	YOR075W	AIM33	Q04516	312 aa		3.01	□□□□□ -1.93
UFE1	YOR075W	IES4	Q08561	116 aa		3.01	□□□□□ -1.93
UFE1	YOR075W	FSH3	Q99369	266 aa		3.01	□□□□□ -1.93
UFE1	YOR075W	TPI1	P00942	248 aa	Known RBP	3	□□□□□ -1.93
UFE1	YOR075W	PHO84	P25297	587 aa	Known RBP	3	□□□□□ -1.93
UFE1	YOR075W	RPA34	P47006	233 aa	Predicted RBP	3	□□□□□ -1.93
UFE1	YOR075W	YJR030C	P47101	745 aa		3	□□□□□ -1.93
UFE1	YOR075W	PIN3	Q06449	215 aa		3	□□□□□ -1.93
UFE1	YOR075W	FRE6	Q12473	712 aa		3	□□□□□ -1.93
UFE1	YOR075W	DET1	Q99288	334 aa	Known RBP	3	□□□□□ -1.93
UFE1	YOR075W	UBA3	Q99344	299 aa		3	□□□□□ -1.93
UFE1	YOR075W	RPS16A	P0CX51	143 aa	Known RBP	2.99	□□□□□ -1.93
UFE1	YOR075W	RPS16B	P0CX52	143 aa	Known RBP	2.99	□□□□□ -1.93
UFE1	YOR075W	THR4	P16120	514 aa	Known RBP	2.99	□□□□□ -1.93
UFE1	YOR075W	FAR1	P21268	830 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	GRR1	P24814	1151 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	RDS1	P25611	832 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	ADH5	P38113	351 aa	Known RBP	2.99	□□□□□ -1.93
UFE1	YOR075W	YBR241C	P38142	488 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	SHE1	P38200	338 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	SHE3	P38272	425 aa	Known RBP	2.99	□□□□□ -1.93
UFE1	YOR075W	BIO3	P50277	480 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	YGR015C	P53208	328 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	UTP6	Q02354	440 aa	Known RBP	2.99	□□□□□ -1.93
UFE1	YOR075W	SRO7	Q12038	1033 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	RAX2	Q12465	1220 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	AIM45	Q12480	344 aa	Known RBP	2.99	□□□□□ -1.93
UFE1	YOR075W	SFG1	Q12507	346 aa		2.99	□□□□□ -1.93
UFE1	YOR075W	PDC2	P32896	925 aa		2.98	□□□□□ -1.93
UFE1	YOR075W	YPT35	P38815	214 aa	Known RBP	2.98	□□□□□ -1.93
UFE1	YOR075W	AIM23	P47015	356 aa		2.98	□□□□□ -1.93
UFE1	YOR075W	LST7	P53237	242 aa		2.98	□□□□□ -1.93
UFE1	YOR075W	SLT2	Q00772	484 aa		2.98	□□□□□ -1.93
UFE1	YOR075W	GAS2	Q06135	555 aa		2.98	□□□□□ -1.93
UFE1	YOR075W	YOR376W	Q08900	122 aa		2.98	□□□□□ -1.93
UFE1	YOR075W	RPS19A	P07280	144 aa	Known RBP	2.97	□□□□□ -1.93
UFE1	YOR075W	RPS19B	P07281	144 aa	Predicted RBP	2.97	□□□□□ -1.93
UFE1	YOR075W	MAS1	P10507	462 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	PUT4	P15380	627 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	PMT2	P31382	759 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	HMX1	P32339	317 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	DTR1	P38125	572 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	ECM34	P38728	170 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	YER184C	P39961	794 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	YJR054W	P47114	497 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	VEL1	P53058	206 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	CDH1	P53197	566 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	SMP3	Q04174	516 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	YMR310C	Q04867	317 aa	Predicted RBP	2.97	□□□□□ -1.93
UFE1	YOR075W	YOL075C	Q08234	1294 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	SLM3	Q12093	417 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	NBL1	Q3E7Y6	73 aa		2.97	□□□□□ -1.93
UFE1	YOR075W	EPT1	P22140	391 aa		2.96	□□□□□ -1.94
UFE1	YOR075W	SPS19	P32573	292 aa	Known RBP	2.96	□□□□□ -1.94
UFE1	YOR075W	RBG1	P39729	369 aa		2.96	□□□□□ -1.94
UFE1	YOR075W	MOB2	P43563	287 aa		2.96	□□□□□ -1.94
UFE1	YOR075W	EFM3	P47163	339 aa		2.96	□□□□□ -1.94
UFE1	YOR075W	APJ1	P53940	528 aa		2.96	□□□□□ -1.94
UFE1	YOR075W	TRM82	Q03774	444 aa		2.96	□□□□□ -1.94
UFE1	YOR075W	DBP9	Q06218	594 aa	Known RBP	2.96	□□□□□ -1.94
UFE1	YOR075W	GLE1	Q12315	538 aa		2.96	□□□□□ -1.94
UFE1	YOR075W	ARF2	P19146	181 aa	Known RBP	2.95	□□□□□ -1.94
UFE1	YOR075W	CKI1	P20485	582 aa		2.95	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 43.3 ms