RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	Q0142	Q9ZZW4	58 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	TOR1	P35169	2470 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	GCD1	P09032	578 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	SSA3	P09435	649 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	PRP2	P20095	876 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	MAG1	P22134	296 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	TRX2	P22803	104 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	PUP1	P25043	261 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	KRR1	P25586	316 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	CDC50	P25656	391 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	FAA1	P30624	700 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	DOA4	P32571	926 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	AIM26	P32858	118 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	SFC1	P33303	322 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	SNU114	P36048	1008 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	POL12	P38121	705 aa	Predicted RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	CHK1	P38147	527 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	SHE3	P38272	425 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	PRS3	P38689	320 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	FMO1	P38866	432 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	RTT105	P40063	208 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	RGI2	P40188	164 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	MPM1	P40364	252 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	PRM10	P42946	383 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	TAD2	P47058	250 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	ARH1	P48360	493 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	SRP1	Q02821	542 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	YHM2	Q04013	314 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	TPO3	Q06451	622 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	YLR049C	Q12110	428 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	SIA1	Q12212	622 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	MDY2	Q12285	212 aa		4.6	□□□□□ -1.67
CAF4	YKR036C	HRP1	Q99383	534 aa	Known RBP	4.6	□□□□□ -1.67
CAF4	YKR036C	UBR1	P19812	1950 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	ERG20	P08524	352 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	YPK1	P12688	680 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	SAM35	P14693	329 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	GLK1	P17709	500 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	YCL002C	P25565	263 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	POF1	P25576	258 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	YCR061W	P25639	631 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	YIM1	P28625	365 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	SUI1	P32911	108 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	TSA1	P34760	196 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	YPT52	P36018	234 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	TUL1	P36096	758 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	ALY1	P36117	915 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	MRPL36	P36531	177 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	YMC2	P38087	329 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	SFB3	P38810	929 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	NVJ1	P38881	321 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	AIM18	P38884	321 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	NOP16	P40007	231 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	ATM1	P40416	690 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	YIR007W	P40566	764 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	CHA4	P43634	648 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	BIT61	P47041	543 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	MCM22	P47167	239 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	FAA4	P47912	694 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	YGL159W	P53110	370 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	SWC4	P53201	476 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	YGR283C	P53336	341 aa	Predicted RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	RLI1	Q03195	608 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	YMR130W	Q04223	302 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	EMI1	Q04406	187 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	SWF1	Q04629	336 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	GAD1	Q04792	585 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	MCA1	Q08601	432 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	SPC3	Q12133	184 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	RPN5	Q12250	445 aa	Known RBP	4.59	□□□□□ -1.67
CAF4	YKR036C	YPR145C-A	Q2V2P0	78 aa		4.59	□□□□□ -1.67
CAF4	YKR036C	YEL009C-A	A0A023PZF2	135 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	SCEI	P03882	235 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	REV1	P12689	985 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	SNF6	P18888	332 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
CAF4	YKR036C	HOM6	P31116	359 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	ECT1	P33412	323 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YBR013C	P38215	129 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	BTT1	P40314	149 aa	Predicted RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	PFA3	P42836	336 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	ATG18	P43601	500 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	LYS20	P48570	428 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	YGR127W	P53275	312 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	SNO1	Q03144	224 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YMR265C	Q03508	461 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	MSS11	Q03825	758 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	CAC2	Q04199	468 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	YML053C	Q04978	212 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	ATX2	Q12067	313 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	UBX3	Q12229	455 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	PSF1	Q12488	208 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	CDC28	P00546	298 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	HTA2	P04912	132 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	PEP4	P07267	405 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	CAR2	P07991	424 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	MTF1	P14908	341 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	SIR1	P21691	654 aa		4.58	□□□□□ -1.68
CAF4	YKR036C	RNA14	P25298	677 aa	Known RBP	4.58	□□□□□ -1.68
CAF4	YKR036C	RSC6	P25632	483 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 23.1 ms