RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	DST1	P07273	309 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	MRP13	P12686	339 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
SSH4	YKL124W	ADH7	P25377	361 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	SUA5	P32579	426 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	GDH2	P33327	1092 aa	Known RBP	4.14	□□□□□ -1.75
SSH4	YKL124W	FRE2	P36033	711 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	SHU2	P38957	223 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	GID8	P40208	455 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	AYR1	P40471	297 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	AGE2	P40529	298 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	MUP1	P50276	574 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	OGG1	P53397	376 aa	Predicted RBP	4.14	□□□□□ -1.75
SSH4	YKL124W	YNL010W	P53981	241 aa	Known RBP	4.14	□□□□□ -1.75
SSH4	YKL124W	RQC1	Q05468	723 aa	Known RBP	4.14	□□□□□ -1.75
SSH4	YKL124W	BCP1	Q06338	283 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	VPS74	Q06385	345 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	FMP45	Q07651	309 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	ESA1	Q08649	445 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	RPL7B	Q12213	244 aa	Known RBP	4.14	□□□□□ -1.75
SSH4	YKL124W	RPN5	Q12250	445 aa	Known RBP	4.14	□□□□□ -1.75
SSH4	YKL124W	TY1A-BL	Q12266	440 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	SAS5	Q99314	248 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	SLH1	P53327	1967 aa	Known RBP	4.14	□□□□□ -1.75
SSH4	YKL124W	CAR1	P00812	333 aa	Known RBP	4.13	□□□□□ -1.75
SSH4	YKL124W	FLP1	P03870	423 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	STP22	P25604	385 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	NAM9	P27929	486 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	CTS1	P29029	562 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	KAE1	P36132	386 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	YBR139W	P38109	508 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	CHK1	P38147	527 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	YIL067C	P40514	678 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	TDA10	P42938	290 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	IMA1	P53051	589 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	YGL260W	P53056	76 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	MRM2	P53123	320 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	VPS73	P53142	486 aa	Known RBP	4.13	□□□□□ -1.75
SSH4	YKL124W	DUO1	P53168	247 aa	Known RBP	4.13	□□□□□ -1.75
SSH4	YKL124W	TIM21	P53220	239 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	REC102	Q02721	264 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	ATG33	Q06485	197 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	HDA2	Q06629	674 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	MCH5	Q08777	521 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	ULA1	Q12059	462 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	MRPL23	Q12487	163 aa	Predicted RBP	4.13	□□□□□ -1.75
SSH4	YKL124W	YKL033W-A	Q86ZR7	236 aa		4.13	□□□□□ -1.75
SSH4	YKL124W	RPL43A	P0CX25	92 aa	Known RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	RPL43B	P0CX26	92 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	BOS1	P25385	244 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	STE14	P32584	239 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	ATO2	P32907	282 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	GLG1	P36143	616 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	MOH1	P38191	138 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YBR062C	P38239	180 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	FMP32	P43557	207 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	PTR3	P43606	678 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	STE24	P47154	453 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	SPT20	P50875	604 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	GIM5	Q04493	163 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	MRPL1	Q04599	285 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	SPC2	Q04969	178 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	GLO2	Q05584	274 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YPR174C	Q06616	221 aa	Predicted RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	YEH2	Q07950	538 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YIG1	Q08956	461 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	HUA2	Q12134	243 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	HEM13	P11353	328 aa	Known RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	CLB3	P24870	427 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	BUD5	P25300	642 aa	Predicted RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	IDH2	P28241	369 aa	Known RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	ZUO1	P32527	433 aa	Known RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	CAT2	P32796	670 aa	Known RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	MSN2	P33748	704 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	TRR2	P38816	342 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	FMP52	P40008	231 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	GIP2	P40036	548 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	BAP3	P41815	604 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	MDV1	P47025	714 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	RHO4	Q00246	291 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YMR102C	Q03177	834 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	EFR3	Q03653	782 aa	Known RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	NUP53	Q03790	475 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	LUC7	Q07508	261 aa	Predicted RBP	4.12	□□□□□ -1.75
SSH4	YKL124W	YOR365C	Q08844	703 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YOR376W	Q08900	122 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YDL109C	Q12103	647 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YOR342C	Q12182	319 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	JLP1	Q12358	412 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	YOR032W-A	Q8TGS1	66 aa		4.12	□□□□□ -1.75
SSH4	YKL124W	RAS2	P01120	322 aa	Known RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	ALG7	P07286	448 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	SUI3	P09064	285 aa	Known RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	YMR085W	P0CF18	432 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	MRPL33	P20084	86 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	RPB5	P20434	215 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	CLB4	P24871	460 aa		4.11	□□□□□ -1.75
SSH4	YKL124W	RVS161	P25343	265 aa	Known RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	RPC19	P28000	142 aa	Known RBP	4.11	□□□□□ -1.75
SSH4	YKL124W	SSO1	P32867	290 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 50.2 ms