RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	SRP68	P38687	599 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	EFM1	P38732	585 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	ALP1	P38971	573 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YNL194C	P40169	301 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	FKH2	P41813	862 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	ACT1	P60010	375 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	DIG1	Q03063	452 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	YPR109W	Q06104	294 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	TPO3	Q06451	622 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YJR112W-A	Q3E743	109 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	SLO1	Q3E784	85 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YLR419W	Q06698	1435 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	KRE5	P22023	1365 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	HAP2	P06774	265 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	RPS4A	P0CX35	261 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	RPS4B	P0CX36	261 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	MTF1	P14908	341 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	PRE1	P22141	198 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	YCR015C	P25616	317 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	SRB5	P32585	307 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	REC104	P33323	182 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	TOS1	P38288	455 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	LEU5	P38702	357 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	DHH1	P39517	506 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	ELO3	P40319	345 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YIL108W	P40483	696 aa	Known RBP	4.6	□□□□□ -1.67
SEC9	YGR009C	YFL054C	P43549	646 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	AIM22	P47051	409 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YGR273C	P53329	174 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	EFM6	P53970	246 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	KIN4	Q01919	800 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YPL113C	Q02961	396 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YDR541C	Q03049	344 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	PFA5	Q03289	374 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	TRS31	Q03337	283 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	YPR071W	Q12346	211 aa		4.6	□□□□□ -1.67
SEC9	YGR009C	SIN3	P22579	1536 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	HTS1	P07263	546 aa	Known RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	PPR1	P07272	904 aa	Predicted RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	DDI2	P0CH63	225 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	DDI3	P0CH64	225 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	RPS16A	P0CX51	143 aa	Known RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	RPS16B	P0CX52	143 aa	Known RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	PDA1	P16387	420 aa	Known RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	AHC2	P25649	128 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	SUA7	P29055	345 aa	Predicted RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	DGR2	P32330	852 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	RML2	P32611	393 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	COS9	P36034	407 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	PHD1	P36093	366 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	GPI16	P38875	610 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	CRG1	P38892	291 aa	RIP-Chip data	4.59	□□□□□ -1.67	not detected
SEC9	YGR009C	YAR028W	P39548	234 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	YJR011C	P47086	261 aa	Predicted RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	YGR035C	P53222	116 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	OCA2	P53949	197 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	YNL040W	P53960	456 aa	Predicted RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	MTD1	Q02046	320 aa	Known RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	ATP25	Q03153	612 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	CCE1	Q03702	353 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	SDH7	Q04401	133 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	YMR253C	Q04835	414 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	YDR278C	Q05612	105 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	YLR179C	Q06252	201 aa	Known RBP	4.59	□□□□□ -1.67
SEC9	YGR009C	RXT3	Q07458	294 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	TPO1	Q07824	586 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	GEP3	Q08622	556 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	FEX1	Q08913	375 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	YIR021W-A	Q3E739	70 aa		4.59	□□□□□ -1.67
SEC9	YGR009C	POM152	P39685	1337 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	YDR157W	A0A023PZE8	133 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	RAD10	P06838	210 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	PHO13	P19881	312 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	YMR31	P19955	123 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	CCA1	P21269	546 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	ADH7	P25377	361 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	EHD3	P28817	500 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	ERG9	P29704	444 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	DEG1	P31115	442 aa	Known RBP	4.58	□□□□□ -1.68
SEC9	YGR009C	AEP1	P32493	518 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	TMT1	P32643	299 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	MRPL3	P36516	390 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	RRN10	P38204	145 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	MRX5	P47007	382 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	YCL001W-A	P87012	153 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	IZH1	Q03419	316 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	RKM2	Q03942	479 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	TMN2	Q04562	672 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	NOC4	Q06512	552 aa	Predicted RBP	4.58	□□□□□ -1.68
SEC9	YGR009C	YOR059C	Q08448	450 aa	Known RBP	4.58	□□□□□ -1.68
SEC9	YGR009C	THI72	Q08579	599 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	SCP1	Q08873	200 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	UPC2	Q12151	913 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	TPO4	Q12256	659 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	RGT2	Q12300	763 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	YLR302C	O13544	120 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	SOD2	P00447	233 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	URA3	P03962	267 aa		4.58	□□□□□ -1.68
SEC9	YGR009C	DED1	P06634	604 aa	Known RBP	4.58	□□□□□ -1.68
SEC9	YGR009C	CUP2	P15315	225 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms