RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC40	YDR364C	RPB4	P20433	221 aa	Predicted RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	MRPL8	P22353	238 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	RHB1	P25378	209 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	GEX1	P25596	615 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YJU2	P28320	278 aa	Predicted RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	FAA1	P30624	700 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	ROT2	P38138	954 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	BNA4	P38169	460 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	LDB7	P38210	180 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	RFC3	P38629	340 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YHR131C	P38835	850 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	PAN6	P40459	309 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	POP1	P41812	875 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	ELP2	P42935	788 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	BUD13	P46947	266 aa	Predicted RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	RPA34	P47006	233 aa	Predicted RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	AIF1	P52923	378 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	IDP3	P53982	420 aa	Known RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	TVP15	Q03860	143 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	CSN9	Q03981	162 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	SEC10	Q06245	871 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	MCP2	Q06567	569 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	RAD34	Q06665	692 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	NDD1	Q08887	554 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	APC9	Q12107	265 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	YLR046C	Q12253	270 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	PEX11	Q12462	236 aa		3.12	□□□□□ -1.91
CDC40	YDR364C	NOT5	Q12514	560 aa	Predicted RBP	3.12	□□□□□ -1.91
CDC40	YDR364C	UBR2	Q07963	1872 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	RIF1	P29539	1916 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	ILV5	P06168	395 aa	Known RBP	3.11	□□□□□ -1.91
CDC40	YDR364C	PUT2	P07275	575 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	YCR099C	P25657	155 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	RPC34	P32910	317 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	ASC1	P38011	319 aa	Known RBP	3.11	□□□□□ -1.91
CDC40	YDR364C	RIM2	P38127	377 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	MNL1	P38888	796 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	SEO1	P39709	593 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	EXO1	P39875	702 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	HAT2	P39984	401 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	TES1	P41903	349 aa	Known RBP	3.11	□□□□□ -1.91
CDC40	YDR364C	BOL2	P53082	120 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	ROG1	P53118	685 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	MRM2	P53123	320 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	OSH6	Q02201	448 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	YPL014W	Q02606	381 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	PIR1	Q03178	341 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	SPC24	Q04477	213 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	YPR114W	Q06107	315 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	YIL002W-A	Q3E7Z5	69 aa		3.11	□□□□□ -1.91
CDC40	YDR364C	STE2	D6VTK4	431 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	PEP4	P07267	405 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	REV1	P12689	985 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	AMD1	P15274	810 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	ATP10	P18496	279 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	EXO70	P19658	623 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	DBP3	P20447	523 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	YCR090C	P25654	182 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	ECM25	P32525	599 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	REC114	P32841	428 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	MTR2	P34232	184 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	FZO1	P38297	855 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	EFM1	P38732	585 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	MED6	P38782	295 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	BZZ1	P38822	633 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	FRT2	P39734	528 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	HEM14	P40012	539 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	ALG8	P40351	577 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	ERG10	P41338	398 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	YFR018C	P43599	363 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	AIM23	P47015	356 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	PYK2	P52489	506 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	VEL1	P53058	206 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	SMM1	P53720	384 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	VAC7	P53950	1165 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	LSM3	P57743	89 aa	Known RBP	3.1	□□□□□ -1.91
CDC40	YDR364C	SPP2	Q02521	185 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	RMI1	Q02685	241 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	NHP10	Q03435	203 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	GOT1	Q03554	138 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	FMN1	Q03778	218 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	ATG26	Q06321	1198 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	YOL019W	Q08157	551 aa		3.1	□□□□□ -1.91
CDC40	YDR364C	HEM2	P05373	342 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	LEU4	P06208	619 aa	Known RBP	3.09	□□□□□ -1.92
CDC40	YDR364C	RIP1	P08067	215 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	SPR1	P32603	445 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	PTM1	P32857	523 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	MIA40	P36046	403 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	CBP4	P37267	147 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	TCM62	P38228	572 aa	Known RBP	3.09	□□□□□ -1.92
CDC40	YDR364C	STN1	P38960	494 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	PCF11	P39081	626 aa	Predicted RBP	3.09	□□□□□ -1.92
CDC40	YDR364C	COA1	P40452	197 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	YRB1	P41920	201 aa	Known RBP	3.09	□□□□□ -1.92
CDC40	YDR364C	GCD14	P46959	383 aa	Predicted RBP	3.09	□□□□□ -1.92
CDC40	YDR364C	YHC3	P47040	408 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	EFM3	P47163	339 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	NUP84	P52891	726 aa		3.09	□□□□□ -1.92
CDC40	YDR364C	EMC4	P53073	190 aa		3.09	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 24.7 ms