RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TMPRSS11EQ9UL52 423 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 CTNND2Q9UQB3 1225 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 FRMPD2Q68DX3 1309 aaPredicted RBP9.49□□□□□ -0.89
NUP54-215ENST00000514313 ST20-MTHFSA0A0A6YYL1 179 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 OFD1O75665 1012 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 ZBTB7AO95365 584 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 TRIM25Q14258 630 aaKnown RBP9.48□□□□□ -0.89
NUP54-215ENST00000514313 BRD3Q15059 726 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 MUM1Q2TAK8 710 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 CD276Q5ZPR3 534 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 SLFN12LQ6IEE8 588 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 KIAA1841Q6NSI8 718 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 RPTNQ6XPR3 784 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 FAM126BQ8IXS8 530 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 SVIPQ8NHG7 77 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 SLC35G2Q8TBE7 412 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 AUTS2Q8WXX7 1259 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 TSPAN17Q96FV3 270 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 RAX2Q96IS3 184 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 ZNF700Q9H0M5 742 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 WNT8AQ9H1J5 351 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 BCAS3Q9H6U6 928 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 DPP7Q9UHL4 492 aa9.48□□□□□ -0.89
NUP54-215ENST00000514313 LRG1P02750 347 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 MTHFD2P13995 350 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 RGS3P49796 1198 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 SLC5A3P53794 718 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 LGALS4P56470 323 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 PRR5P85299 388 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 KIF23Q02241 960 aaPredicted RBP9.47□□□□□ -0.89
NUP54-215ENST00000514313 ADCY2Q08462 1091 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 MBNL2Q5VZF2 373 aaKnown RBP9.47□□□□□ -0.89
NUP54-215ENST00000514313 LILRA6Q6PI73 481 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 KANSL1Q7Z3B3 1105 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 SAMD3Q8N6K7 520 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 TSPEARQ8WU66 669 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 ARHGAP28Q9P2N2 729 aa9.47□□□□□ -0.89
NUP54-215ENST00000514313 PFKMP08237 780 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 PTGS1P23219 599 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 FXR1P51114 621 aaKnown RBP eCLIP9.46□□□□□ -0.9
NUP54-215ENST00000514313 ROM1Q03395 351 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 SLC9A5Q14940 896 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 NR1I3Q14994 352 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 PLEKHN1Q494U1 663 aaPredicted RBP9.46□□□□□ -0.9
NUP54-215ENST00000514313 MIB1Q86YT6 1006 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 LYSMD2Q8IV50 215 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 PPM1NQ8N819 430 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 SLC39A2Q9NP94 309 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 C1orf112Q9NSG2 853 aa9.46□□□□□ -0.9
NUP54-215ENST00000514313 YBX2Q9Y2T7 364 aaKnown RBP9.46□□□□□ -0.9
NUP54-215ENST00000514313 POU2F2P09086 479 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 MYBP10242 640 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 ITGB7P26010 798 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 STAT5AP42229 794 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 RAB3GAP1Q15042 981 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 UAP1L1Q3KQV9 507 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 ATAT1Q5SQI0 421 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 ADGRF1Q5T601 910 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 CYB5RLQ6IPT4 315 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 TEPPQ6URK8 271 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 TP53INP2Q8IXH6 220 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 THEMISQ8N1K5 641 aaPredicted RBP9.45□□□□□ -0.9
NUP54-215ENST00000514313 PJA1Q8NG27 643 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 ABHD4Q8TB40 342 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 HPS3Q969F9 1004 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 TOE1Q96GM8 510 aaKnown RBP9.45□□□□□ -0.9
NUP54-215ENST00000514313 AMNQ9BXJ7 453 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 IFT122Q9HBG6 1241 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 RBPJLQ9UBG7 517 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 DNM3Q9UQ16 869 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 COMMD10Q9Y6G5 202 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 NUMBLQ9Y6R0 609 aa9.45□□□□□ -0.9
NUP54-215ENST00000514313 NFIBO00712 420 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 CTNND1O60716 968 aaKnown RBP9.44□□□□□ -0.9
NUP54-215ENST00000514313 MPOP05164 745 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 CELA3BP08861 270 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 CCT2P78371 535 aaKnown RBP9.44□□□□□ -0.9
NUP54-215ENST00000514313 CDK17Q00537 523 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 OS9Q13438 667 aaPredicted RBP9.44□□□□□ -0.9
NUP54-215ENST00000514313 ZNF792Q3KQV3 632 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 IL31Q6EBC2 164 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 PROSER1Q86XN7 944 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 SLC41A1Q8IVJ1 513 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 ZBTB34Q8NCN2 500 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 AGBL5Q8NDL9 886 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 DIS3LQ8TF46 1054 aaKnown RBP9.44□□□□□ -0.9
NUP54-215ENST00000514313 PLA2G2DQ9UNK4 145 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 FAM50BQ9Y247 325 aa9.44□□□□□ -0.9
NUP54-215ENST00000514313 A6NNZ2 444 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 ADAMTS4O75173 837 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 EIF3JO75822 258 aaKnown RBP9.43□□□□□ -0.9
NUP54-215ENST00000514313 PCDH8O95206 1070 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 NEK3P51956 506 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 SPIDRQ14159 915 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 LRSAM1Q6UWE0 723 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 SMC5Q8IY18 1101 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 GRAMD1CQ8IYS0 662 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 FBXO41Q8TF61 875 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 COA7Q96BR5 231 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 INTS4Q96HW7 963 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms