RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 SOX10P56693 466 aa29.64■■■□□ 2.34
MSX1-201ENST00000382723 CDKAL1Q5VV42 579 aa29.64■■■□□ 2.34
MSX1-201ENST00000382723 CSGALNACT2Q8N6G5 542 aa29.64■■■□□ 2.34
MSX1-201ENST00000382723 EEF2KMTQ96G04 330 aa29.64■■■□□ 2.34
MSX1-201ENST00000382723 SRRTQ9BXP5 876 aaKnown RBP29.64■■■□□ 2.34
MSX1-201ENST00000382723 CFHR5Q9BXR6 569 aa29.64■■■□□ 2.34
MSX1-201ENST00000382723 SMARCAD1Q9H4L7 1026 aa29.64■■■□□ 2.34
MSX1-201ENST00000382723 WDR81Q562E7 1941 aa29.64■■■□□ 2.34
MSX1-201ENST00000382723 NKRFO15226 690 aaKnown RBP eCLIP29.63■■■□□ 2.33
MSX1-201ENST00000382723 PRPF6O94906 941 aaKnown RBP29.63■■■□□ 2.33
MSX1-201ENST00000382723 POLGP54098 1239 aaPredicted RBP29.63■■■□□ 2.33
MSX1-201ENST00000382723 EPM2AIP1Q7L775 607 aaPredicted RBP29.63■■■□□ 2.33
MSX1-201ENST00000382723 FAM167AQ96KS9 214 aa29.63■■■□□ 2.33
MSX1-201ENST00000382723 ATP6V0A4Q9HBG4 840 aa29.63■■■□□ 2.33
MSX1-201ENST00000382723 LARSQ9P2J5 1176 aaKnown RBP29.63■■■□□ 2.33
MSX1-201ENST00000382723 XRCC5P13010 732 aaKnown RBP29.63■■■□□ 2.33
MSX1-201ENST00000382723 CREBRFQ8IUR6 639 aa29.63■■■□□ 2.33
MSX1-201ENST00000382723 LENG1Q96BZ8 264 aaPredicted RBP29.63■■■□□ 2.33
MSX1-201ENST00000382723 FIZ1Q96SL8 496 aa29.63■■■□□ 2.33
MSX1-201ENST00000382723 MGAMO43451 1857 aa29.62■■■□□ 2.33
MSX1-201ENST00000382723 IGHA2P01877 340 aa29.62■■■□□ 2.33
MSX1-201ENST00000382723 PLS3P13797 630 aa29.62■■■□□ 2.33
MSX1-201ENST00000382723 PLCB4Q15147 1175 aa29.62■■■□□ 2.33
MSX1-201ENST00000382723 ZC2HC1CQ53FD0 456 aaPredicted RBP29.62■■■□□ 2.33
MSX1-201ENST00000382723 TSG101Q99816 390 aa29.62■■■□□ 2.33
MSX1-201ENST00000382723 XPO4Q9C0E2 1151 aaKnown RBP29.62■■■□□ 2.33
MSX1-201ENST00000382723 DYNC1LI2O43237 492 aaPredicted RBP29.61■■■□□ 2.33
MSX1-201ENST00000382723 LGALS2P05162 132 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 ZNF720Q7Z2F6 126 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 BBXQ8WY36 941 aaPredicted RBP29.61■■■□□ 2.33
MSX1-201ENST00000382723 XPNPEP1Q9NQW7 623 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 PDLIM7Q9NR12 457 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 ZNF286BP0CG31 522 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 IRF5Q13568 498 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 EMC2Q15006 297 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 MCPH1Q8NEM0 835 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 CD99L2Q8TCZ2 262 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 ATP8B4Q8TF62 1192 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 TRPC6Q9Y210 931 aa29.61■■■□□ 2.33
MSX1-201ENST00000382723 PEX3P56589 373 aa29.6■■■□□ 2.33
MSX1-201ENST00000382723 UBASH3AP57075 661 aa29.6■■■□□ 2.33
MSX1-201ENST00000382723 LRRC63Q05C16 580 aa29.6■■■□□ 2.33
MSX1-201ENST00000382723 TRIB2Q92519 343 aa29.6■■■□□ 2.33
MSX1-201ENST00000382723 KCTD10Q9H3F6 313 aa29.6■■■□□ 2.33
MSX1-201ENST00000382723 MYH9P35579 1960 aaKnown RBP29.6■■■□□ 2.33
MSX1-201ENST00000382723 K7ENM7 598 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 HOXD13P35453 343 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 SLC26A2P50443 739 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 KCNA1Q09470 495 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 TARBP2Q15633 366 aaKnown RBP29.59■■■□□ 2.33
MSX1-201ENST00000382723 KSR1Q8IVT5 923 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 ZNF507Q8TCN5 953 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 KIFAP3Q92845 792 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 THAP9Q9H5L6 903 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 ERAP1Q9NZ08 941 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 GNEQ9Y223 722 aaKnown RBP29.59■■■□□ 2.33
MSX1-201ENST00000382723 PPFIA4O75335 1185 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 MMP3P08254 477 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 KNOP1Q1ED39 458 aaKnown RBP29.59■■■□□ 2.33
MSX1-201ENST00000382723 MFSD14CQ5VZR4 134 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 DRC7Q8IY82 874 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 SPC24Q8NBT2 197 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 SLC7A3Q8WY07 619 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 MRFAP1L1Q96HT8 127 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 NAP1L5Q96NT1 182 aaPredicted RBP29.59■■■□□ 2.33
MSX1-201ENST00000382723 CEP89Q96ST8 783 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 DHX33Q9H6R0 707 aaKnown RBP29.59■■■□□ 2.33
MSX1-201ENST00000382723 FAM184BQ9ULE4 1060 aa29.59■■■□□ 2.33
MSX1-201ENST00000382723 KCNJ18B7U540 433 aa29.58■■■□□ 2.33
MSX1-201ENST00000382723 EIF3DO15371 548 aaKnown RBP eCLIP29.58■■■□□ 2.33
MSX1-201ENST00000382723 KCNJ12Q14500 433 aa29.58■■■□□ 2.33
MSX1-201ENST00000382723 BMT2Q1RMZ1 405 aa29.58■■■□□ 2.33
MSX1-201ENST00000382723 ZCWPW2Q504Y3 356 aa29.58■■■□□ 2.33
MSX1-201ENST00000382723 STXBP4Q6ZWJ1 553 aa29.58■■■□□ 2.33
MSX1-201ENST00000382723 TLK2Q86UE8 772 aa29.58■■■□□ 2.33
MSX1-201ENST00000382723 IRF2BP1Q8IU81 584 aa29.58■■■□□ 2.33
MSX1-201ENST00000382723 NOC3LQ8WTT2 800 aaKnown RBP29.58■■■□□ 2.33
MSX1-201ENST00000382723 POLR3FQ9H1D9 316 aaPredicted RBP29.58■■■□□ 2.33
MSX1-201ENST00000382723 TMEM143Q96AN5 459 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 RNPEPQ9H4A4 650 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 PCDHB13Q9Y5F0 798 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 ARID2Q68CP9 1835 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 GPR25O00155 361 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 RFC5P40937 340 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 TCP11X2Q5H9J9 407 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 TRPV1Q8NER1 839 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 BSNDQ8WZ55 320 aa29.57■■■□□ 2.32
MSX1-201ENST00000382723 PCNTO95613 3336 aa29.56■■■□□ 2.32
MSX1-201ENST00000382723 CCDC169A6NNP5 214 aa29.56■■■□□ 2.32
MSX1-201ENST00000382723 SLC16A4O15374 487 aa29.56■■■□□ 2.32
MSX1-201ENST00000382723 DMP1Q13316 513 aaPredicted RBP29.56■■■□□ 2.32
MSX1-201ENST00000382723 DGKDQ16760 1214 aa29.56■■■□□ 2.32
MSX1-201ENST00000382723 C16orf70Q9BSU1 422 aa29.56■■■□□ 2.32
MSX1-201ENST00000382723 MAGEC2Q9UBF1 373 aaPredicted RBP29.56■■■□□ 2.32
MSX1-201ENST00000382723 ZBTB42B2RXF5 422 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 CBFA2T2O43439 604 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 NPTX2P47972 431 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 TBC1D8BQ0IIM8 1120 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 TRAPPC12Q8WVT3 735 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 HBP1O60381 514 aa29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms