RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	MRX4	Q12467	430 aa		5.2	□□□□□ -1.58
VPS1	YKR001C	FSH3	Q99369	266 aa		5.2	□□□□□ -1.58
VPS1	YKR001C	PHO4	P07270	312 aa	Known RBP	5.19	□□□□□ -1.58
VPS1	YKR001C	MTF1	P14908	341 aa	Known RBP	5.19	□□□□□ -1.58
VPS1	YKR001C	VPS33	P20795	691 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	OLE1	P21147	510 aa	Known RBP	5.19	□□□□□ -1.58
VPS1	YKR001C	ISF1	P32488	338 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	KAP122	P32767	1081 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	SPT23	P35210	1082 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	VBA5	P36172	582 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	MRPL15	P36523	253 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	SRO77	P38163	1010 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	YBR220C	P38318	560 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	TRM5	P38793	499 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	AIM46	P38885	310 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	ALR2	P43553	858 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	5.19	□□□□□ -1.58	RIP-Chip
VPS1	YKR001C	YJL163C	P46996	555 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	NIT2	P47016	307 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	YAE1	P47118	141 aa	Predicted RBP	5.19	□□□□□ -1.58
VPS1	YKR001C	SOL1	P50278	321 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	YPT32	P51996	222 aa	Known RBP	5.19	□□□□□ -1.58
VPS1	YKR001C	PMT5	P52867	743 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	YIP3	P53633	176 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	NMA111	P53920	997 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	OCA2	P53949	197 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	YCL001W-A	P87012	153 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	AAT1	Q01802	451 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	LGE1	Q02796	332 aa	Known RBP	5.19	□□□□□ -1.58
VPS1	YKR001C	EBS1	Q03466	884 aa	Known RBP	5.19	□□□□□ -1.58
VPS1	YKR001C	YPR196W	Q06595	470 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	FEX2	Q08991	375 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	GTT2	Q12390	233 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	CTF3	Q12748	733 aa		5.19	□□□□□ -1.58
VPS1	YKR001C	GPM1	P00950	247 aa	Known RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	YEL076C-A	P0CX16	216 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	YLR464W	P0CX17	216 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	SGV1	P23293	657 aa	Known RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	SPS19	P32573	292 aa	Known RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	YKL077W	P36081	392 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	RRT2	P38332	387 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	AXL2	P38928	823 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	YEL076C	P39971	216 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	SER2	P42941	309 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	ALY2	P47029	1046 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	CDC7	P06243	507 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	YSP3	P25036	478 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	YCP4	P25349	247 aa	Known RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	CHA1	P25379	360 aa	Known RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	YCL049C	P25577	312 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	PBN1	P25580	416 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	DEG1	P31115	442 aa	Known RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	HXT4	P32467	576 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	SLC1	P33333	303 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	DOA1	P36037	715 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	RIB5	P38145	238 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	POP4	P38336	279 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	DIA4	P38705	446 aa	Predicted RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	UIP3	P39547	235 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	VNX1	P42839	908 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	VPS25	P47142	202 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	DAN4	P47179	1161 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	DIE2	P50076	525 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	RTA1	P53047	317 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	MTG1	Q03151	367 aa	Predicted RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	TRS31	Q03337	283 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	YMR226C	Q05016	267 aa	Known RBP	5.18	□□□□□ -1.58
VPS1	YKR001C	FRQ1	Q06389	190 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	YOR238W	Q08634	303 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	YLR361C-A	Q3E795	98 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	NBL1	Q3E7Y6	73 aa		5.18	□□□□□ -1.58
VPS1	YKR001C	SEC12	P11655	471 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	5.17	□□□□□ -1.58	not detected
VPS1	YKR001C	ERD2	P18414	219 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	RAD14	P28519	371 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	MF(ALPHA)2	P32435	120 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	HOG1	P32485	435 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	UPS2	P35200	230 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	TCD2	P36101	447 aa	Known RBP	5.17	□□□□□ -1.58
VPS1	YKR001C	GEX2	P36173	615 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	SHM1	P37292	490 aa	Predicted RBP	5.17	□□□□□ -1.58
VPS1	YKR001C	GIC1	P38785	314 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	SLS1	P42900	643 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	RGD2	P43556	714 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	GNA1	P43577	159 aa	Predicted RBP	5.17	□□□□□ -1.58
VPS1	YKR001C	PFD1	P46988	109 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	YJR030C	P47101	745 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	ASN1	P49089	572 aa	Known RBP	5.17	□□□□□ -1.58
VPS1	YKR001C	DIA3	P52290	468 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	ERV14	P53173	138 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	YNR065C	P53751	1116 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	RCN2	Q12044	265 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	YPL150W	Q12152	901 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	HRT3	Q12347	344 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	YOR012W	Q12351	137 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	MF(ALPHA)1	P01149	165 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	RPL24A	P04449	155 aa	Known RBP	5.17	□□□□□ -1.58
VPS1	YKR001C	MRP13	P12686	339 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	HEM15	P16622	393 aa		5.17	□□□□□ -1.58
VPS1	YKR001C	UGA1	P17649	471 aa		5.17	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 7.5 ms