RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	AGA1	P32323	725 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	PHA2	P32452	334 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.58	□□□□□ -1.84	not detected
CTK1	YKL139W	YPT53	P36019	220 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	YHK8	P38776	514 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	ATG7	P38862	630 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	CCT4	P39078	528 aa	Known RBP	3.58	□□□□□ -1.84
CTK1	YKL139W	VOA1	P53262	265 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	TRM112	P53738	135 aa	Predicted RBP	3.58	□□□□□ -1.84
CTK1	YKL139W	BUR2	Q05949	395 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	RRG8	Q06109	277 aa		3.58	□□□□□ -1.84
CTK1	YKL139W	PAA1	Q12447	191 aa	Known RBP	3.58	□□□□□ -1.84
CTK1	YKL139W	UGA1	P17649	471 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	FAR1	P21268	830 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	UTR1	P21373	530 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	MYO3	P36006	1272 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	SBE22	P38814	852 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	COX14	P39103	70 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	SEC27	P41811	889 aa	Known RBP	3.57	□□□□□ -1.84
CTK1	YKL139W	LSC1	P53598	329 aa	Known RBP	3.57	□□□□□ -1.84
CTK1	YKL139W	MSO1	P53604	210 aa	Known RBP	3.57	□□□□□ -1.84
CTK1	YKL139W	SPO19	Q03029	223 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	MDM36	Q06820	579 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	NDE2	Q07500	545 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	YLR108C	Q12259	485 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	YRM1	Q12340	786 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	APC2	Q12440	853 aa		3.57	□□□□□ -1.84
CTK1	YKL139W	DCP1	Q12517	231 aa	Predicted RBP	3.57	□□□□□ -1.84
CTK1	YKL139W	DPH5	P32469	300 aa	Predicted RBP	3.56	□□□□□ -1.84
CTK1	YKL139W	YHR131C	P38835	850 aa		3.56	□□□□□ -1.84
CTK1	YKL139W	BTT1	P40314	149 aa	Predicted RBP	3.56	□□□□□ -1.84
CTK1	YKL139W	WWM1	P43582	211 aa	Known RBP	3.56	□□□□□ -1.84
CTK1	YKL139W	YGL185C	P53100	379 aa		3.56	□□□□□ -1.84
CTK1	YKL139W	MRM2	P53123	320 aa		3.56	□□□□□ -1.84
CTK1	YKL139W	LST7	P53237	242 aa		3.56	□□□□□ -1.84
CTK1	YKL139W	NUP116	Q02630	1113 aa		3.56	□□□□□ -1.84
CTK1	YKL139W	GRS2	Q06817	618 aa		3.56	□□□□□ -1.84
CTK1	YKL139W	YCR024C-B	Q3E7Z8	88 aa		3.56	□□□□□ -1.84
CTK1	YKL139W	DET1	Q99288	334 aa	Known RBP	3.56	□□□□□ -1.84
CTK1	YKL139W	STE2	D6VTK4	431 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	CYC3	P06182	269 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	RAD1	P06777	1100 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	CAR2	P07991	424 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	ARF2	P19146	181 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	SAR1	P20606	190 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	PRO3	P32263	286 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	RAD23	P32628	398 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	IST2	P38250	946 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	PEX32	P38292	413 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	YIL029C	P40538	142 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	NAS6	P50086	228 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	ALF1	P53904	254 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	CRZ1	P53968	678 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	RTT103	Q05543	409 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	HNT3	Q08702	217 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	AFT2	Q08957	416 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	TRP1	P00912	224 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	SUP35	P05453	685 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	MSS116	P15424	664 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	YUR1	P26725	428 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	YKL070W	P36087	169 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	IML3	P38265	245 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	YHR182W	P38870	785 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	FET3	P38993	636 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	PRM5	P40476	318 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	UTP25	P40498	721 aa	Known RBP	3.55	□□□□□ -1.84
CTK1	YKL139W	YIL067C	P40514	678 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	IDP2	P41939	412 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	LCB3	P47013	409 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	YGR168C	P53293	376 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	YML122C	Q03207	126 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	ERV41	Q04651	352 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	YLH47	Q06493	454 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	TIP41	Q12199	356 aa		3.55	□□□□□ -1.84
CTK1	YKL139W	CPR4	P25334	318 aa		3.54	□□□□□ -1.84
CTK1	YKL139W	YHR218W	P38899	603 aa		3.54	□□□□□ -1.84
CTK1	YKL139W	RBG1	P39729	369 aa		3.54	□□□□□ -1.84
CTK1	YKL139W	CDC40	P40968	455 aa	Predicted RBP	3.54	□□□□□ -1.84
CTK1	YKL139W	KEG1	P43614	200 aa		3.54	□□□□□ -1.84
CTK1	YKL139W	HER2	Q03557	464 aa		3.54	□□□□□ -1.84
CTK1	YKL139W	DNL4	Q08387	944 aa	Predicted RBP	3.54	□□□□□ -1.84
CTK1	YKL139W	ESA1	Q08649	445 aa		3.54	□□□□□ -1.84
CTK1	YKL139W	YCL021W-A	Q96VH3	125 aa		3.54	□□□□□ -1.84
CTK1	YKL139W	MEX67	Q99257	599 aa	Known RBP	3.54	□□□□□ -1.84
CTK1	YKL139W	PIS1	P06197	220 aa	Known RBP	3.53	□□□□□ -1.84
CTK1	YKL139W	VMA5	P31412	392 aa	Known RBP	3.53	□□□□□ -1.84
CTK1	YKL139W	HXT1	P32465	570 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	RAD5	P32849	1169 aa	Predicted RBP	3.53	□□□□□ -1.84
CTK1	YKL139W	PEX18	P38855	283 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	LOH1	P47055	219 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	YJR030C	P47101	745 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	GTO1	P48239	356 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	TRF5	P48561	642 aa	Known RBP	3.53	□□□□□ -1.84
CTK1	YKL139W	MND1	P53102	219 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	MTM1	P53320	366 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	TDA1	Q03533	586 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	APC4	Q04601	652 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	KAP95	Q06142	861 aa	Known RBP	3.53	□□□□□ -1.84
CTK1	YKL139W	PPT2	Q12036	173 aa		3.53	□□□□□ -1.84
CTK1	YKL139W	EAF3	Q12432	401 aa		3.53	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms