RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 NEK8Q86SG6 692 aa11.87□□□□□ -0.51
CCDC9-203ENST00000596938 ZNF710Q8N1W2 664 aa11.87□□□□□ -0.51
CCDC9-203ENST00000596938 NSUN7Q8NE18 718 aaKnown RBP11.87□□□□□ -0.51
CCDC9-203ENST00000596938 OXER1Q8TDS5 423 aa11.87□□□□□ -0.51
CCDC9-203ENST00000596938 GJA10Q969M2 543 aa11.87□□□□□ -0.51
CCDC9-203ENST00000596938 SUGCTQ9HAC7 445 aa11.87□□□□□ -0.51
CCDC9-203ENST00000596938 PADI3Q9ULW8 664 aa11.87□□□□□ -0.51
CCDC9-203ENST00000596938 XIRP2A4UGR9 3374 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 TBX3O15119 743 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 LPXNO60711 386 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 DTNBO60941 627 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 UPP2O95045 317 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 CD52P31358 61 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 TMEM62Q0P6H9 643 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 GRB10Q13322 594 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 C8orf34Q49A92 452 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 PIK3AP1Q6ZUJ8 805 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 MIER3Q7Z3K6 550 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 SPRED2Q7Z698 418 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 RTN4RL1Q86UN2 441 aaPredicted RBP11.86□□□□□ -0.51
CCDC9-203ENST00000596938 CRIPAKQ8N1N5 446 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 PPM1EQ8WY54 764 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 TNFRSF25Q93038 417 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 SAMD11Q96NU1 681 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 YME1L1Q96TA2 773 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 NIFKQ9BYG3 293 aaKnown RBP11.86□□□□□ -0.51
CCDC9-203ENST00000596938 KCNMB3Q9NPA1 279 aa11.86□□□□□ -0.51
CCDC9-203ENST00000596938 CHMP2AO43633 222 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 SLC37A4O43826 429 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 OATP04181 439 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 TMOD1P28289 359 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 KRT2P35908 639 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 CRYBB1P53674 252 aaPredicted RBP11.85□□□□□ -0.51
CCDC9-203ENST00000596938 PAK2Q13177 524 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 PPP2R5CQ13362 524 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 TARBP2Q15633 366 aaKnown RBP11.85□□□□□ -0.51
CCDC9-203ENST00000596938 CCDC85BQ15834 202 aaPredicted RBP11.85□□□□□ -0.51
CCDC9-203ENST00000596938 UGCGQ16739 394 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 XKR3Q5GH77 459 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 ODR4Q5SWX8 454 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 TRMT1LQ7Z2T5 733 aaKnown RBP11.85□□□□□ -0.51
CCDC9-203ENST00000596938 METTL13Q8N6R0 699 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 LINC01465Q8N7H1 131 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 ATXN2LQ8WWM7 1075 aaKnown RBP11.85□□□□□ -0.51
CCDC9-203ENST00000596938 ZSCAN31Q96LW9 406 aaPredicted RBP11.85□□□□□ -0.51
CCDC9-203ENST00000596938 KIF2CQ99661 725 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 TSPYL2Q9H2G4 693 aaPredicted RBP11.85□□□□□ -0.51
CCDC9-203ENST00000596938 CDHR5Q9HBB8 845 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 BRMS1Q9HCU9 246 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 DOCK5Q9H7D0 1870 aa11.85□□□□□ -0.51
CCDC9-203ENST00000596938 GPR182O15218 404 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 CCNT1O60563 726 aaKnown RBP11.84□□□□□ -0.51
CCDC9-203ENST00000596938 JAK2O60674 1132 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 GPR32O75388 356 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 RPS6KA5O75582 802 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 DGKIO75912 1065 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 STBD1O95210 358 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 MMP1P03956 469 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 RBM25P49756 843 aaKnown RBP11.84□□□□□ -0.51
CCDC9-203ENST00000596938 CDC42EP1Q00587 391 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 PRKCEQ02156 737 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 NR5A1Q13285 461 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 TRIM29Q14134 588 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 EPC2Q52LR7 807 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 EARS2Q5JPH6 523 aaKnown RBP11.84□□□□□ -0.51
CCDC9-203ENST00000596938 EFCAB12Q6NXP0 572 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 IL27Q8NEV9 243 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 HAS1Q92839 578 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 ZNF689Q96CS4 500 aaPredicted RBP11.84□□□□□ -0.51
CCDC9-203ENST00000596938 LLPHQ9BRT6 129 aaKnown RBP11.84□□□□□ -0.51
CCDC9-203ENST00000596938 C17orf80Q9BSJ5 609 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 TMX1Q9H3N1 280 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 ERVK-5Q9HDB9 667 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 VAV3Q9UKW4 847 aa11.84□□□□□ -0.51
CCDC9-203ENST00000596938 NOC2LQ9Y3T9 749 aaKnown RBP11.84□□□□□ -0.51
CCDC9-203ENST00000596938 BTBD18B2RXH4 712 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 EML1O00423 815 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 DKC1O60832 514 aaKnown RBP eCLIP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 BAG4O95429 457 aaKnown RBP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 PSMC5P62195 406 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 ST3GAL1Q11201 340 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 NFX1Q12986 1120 aaKnown RBP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 KIZQ2M2Z5 673 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 KRT40Q6A162 431 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 TMEM192Q8IY95 271 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 SLFN12Q8IYM2 578 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 FIBCD1Q8N539 461 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 FBXO22Q8NEZ5 403 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 TMEM40Q8WWA1 233 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 LINC01599Q8WXQ3 324 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 SYMPKQ92797 1274 aaKnown RBP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 CEP89Q96ST8 783 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 COL25A1Q9BXS0 654 aaPredicted RBP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 ADAMTS10Q9H324 1103 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 RC3H2Q9HBD1 1191 aaKnown RBP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 PRDM6Q9NQX0 595 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 SH2B1Q9NRF2 756 aaPredicted RBP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 RNF216Q9NWF9 866 aaPredicted RBP11.83□□□□□ -0.52
CCDC9-203ENST00000596938 THEGQ9P2T0 379 aa11.83□□□□□ -0.52
CCDC9-203ENST00000596938 MTUS1Q9ULD2 1270 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms