RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 PDIA5Q14554 519 aa25.07■■□□□ 1.6
PTCD3-203ENST00000409783 SHHQ15465 462 aa25.07■■□□□ 1.6
PTCD3-203ENST00000409783 TMEM240Q5SV17 173 aa25.07■■□□□ 1.6
PTCD3-203ENST00000409783 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.07■■□□□ 1.62e-9■□□□□ 11.3
PTCD3-203ENST00000409783 OSBPL7Q9BZF2 842 aa25.07■■□□□ 1.6
PTCD3-203ENST00000409783 SEPT9Q9UHD8 586 aaPredicted RBP25.07■■□□□ 1.6
PTCD3-203ENST00000409783 A0A1W2PPC1 479 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 RSPH10B2B2RC85 870 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 ZBTB39O15060 712 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 NBNO60934 754 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 MED24O75448 989 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 RSPH10BP0C881 870 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 MGAT3Q09327 533 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 SF3A1Q15459 793 aaKnown RBP25.06■■□□□ 1.6
PTCD3-203ENST00000409783 TMEM266Q2M3C6 531 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 TPH2Q8IWU9 490 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 KIAA0319LQ8IZA0 1049 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 TDHQ8IZJ6 230 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 SH2D3AQ9BRG2 576 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 POLR3CQ9BUI4 534 aaPredicted RBP25.06■■□□□ 1.6
PTCD3-203ENST00000409783 FTOQ9C0B1 505 aaKnown RBP eCLIP25.06■■□□□ 1.6
PTCD3-203ENST00000409783 LOXHD1Q8IVV2 1947 aa25.06■■□□□ 1.6
PTCD3-203ENST00000409783 PARNO95453 639 aaKnown RBP25.05■■□□□ 1.6
PTCD3-203ENST00000409783 CHRNA1P02708 482 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 CXCL10P02778 98 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 CTSHP09668 335 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 BECN1Q14457 450 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 PTPAQ15257 358 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 MTERF2Q49AM1 385 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 ARL6IP4Q66PJ3 421 aaKnown RBP25.05■■□□□ 1.6
PTCD3-203ENST00000409783 PLA2G4FQ68DD2 849 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 ZNF365Q70YC5 407 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 CATSPER3Q86XQ3 398 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 ZNF579Q8NAF0 562 aaKnown RBP25.05■■□□□ 1.6
PTCD3-203ENST00000409783 FAM49AQ9H0Q0 323 aaPredicted RBP25.05■■□□□ 1.6
PTCD3-203ENST00000409783 TUFT1Q9NNX1 390 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 CLIC4Q9Y696 253 aa25.05■■□□□ 1.6
PTCD3-203ENST00000409783 IGKV6-21A0A0C4DH24 114 aa25.04■■□□□ 1.6
PTCD3-203ENST00000409783 MAGEB2O15479 319 aa25.04■■□□□ 1.6
PTCD3-203ENST00000409783 ZSCAN22P10073 491 aaPredicted RBP25.04■■□□□ 1.6
PTCD3-203ENST00000409783 YWHABP31946 246 aaKnown RBP25.04■■□□□ 1.6
PTCD3-203ENST00000409783 NPEPPSP55786 919 aa25.04■■□□□ 1.6
PTCD3-203ENST00000409783 DTHD1Q6ZMT9 781 aa25.04■■□□□ 1.6
PTCD3-203ENST00000409783 DEFB128Q7Z7B8 93 aa25.04■■□□□ 1.6
PTCD3-203ENST00000409783 RPUSD2Q8IZ73 545 aaKnown RBP25.04■■□□□ 1.6
PTCD3-203ENST00000409783 LRWD1Q9UFC0 647 aa25.04■■□□□ 1.6
PTCD3-203ENST00000409783 BMP15O95972 392 aa25.03■■□□□ 1.6
PTCD3-203ENST00000409783 RPLP2P05387 115 aaKnown RBP25.03■■□□□ 1.6
PTCD3-203ENST00000409783 PFKMP08237 780 aa25.03■■□□□ 1.6
PTCD3-203ENST00000409783 RPA1P27694 616 aa25.03■■□□□ 1.6
PTCD3-203ENST00000409783 MRPS6P82932 125 aaKnown RBP25.03■■□□□ 1.6
PTCD3-203ENST00000409783 RASIP1Q5U651 963 aa25.03■■□□□ 1.6
PTCD3-203ENST00000409783 PSRC1Q6PGN9 363 aaPredicted RBP25.03■■□□□ 1.6
PTCD3-203ENST00000409783 RSPH3Q86UC2 560 aa25.03■■□□□ 1.6
PTCD3-203ENST00000409783 CYP26B1Q9NR63 512 aa25.03■■□□□ 1.6
PTCD3-203ENST00000409783 PP2D1A8MPX8 630 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 F13A1P00488 732 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 TBC1D8BQ0IIM8 1120 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 MKRN4PQ13434 485 aaPredicted RBP25.02■■□□□ 1.6
PTCD3-203ENST00000409783 ECM1Q16610 540 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 TCTN1Q2MV58 587 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 FOXD4L5Q5VV16 416 aaPredicted RBP25.02■■□□□ 1.6
PTCD3-203ENST00000409783 EFCAB12Q6NXP0 572 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 NME8Q8N427 588 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 ERMNQ8TAM6 284 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 FOXD4L4Q8WXT5 416 aaPredicted RBP25.02■■□□□ 1.6
PTCD3-203ENST00000409783 USP28Q96RU2 1077 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 MMTAG2Q9BU76 263 aaKnown RBP25.02■■□□□ 1.6
PTCD3-203ENST00000409783 CDY2AQ9Y6F7 541 aa25.02■■□□□ 1.6
PTCD3-203ENST00000409783 A0A087WWV3 80 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 MAFO75444 373 aaPredicted RBP25.01■■□□□ 1.59
PTCD3-203ENST00000409783 FGBP02675 491 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 CDC25AP30304 524 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 CLCN3P51790 818 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 HABP4Q5JVS0 413 aaKnown RBP25.01■■□□□ 1.59
PTCD3-203ENST00000409783 LRRC71Q8N4P6 559 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 METTL13Q8N6R0 699 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 HERVK_113Q902F9 699 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 RAB34Q9BZG1 259 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 ANKEF1Q9NU02 776 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 ZDHHC9Q9Y397 364 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 PPME1Q9Y570 386 aa25.01■■□□□ 1.59
PTCD3-203ENST00000409783 VWA3AA6NCI4 1184 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 XRCC6P12956 609 aaKnown RBP eCLIP25■■□□□ 1.591e-7■□□□□ 10
PTCD3-203ENST00000409783 MUTP22033 750 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 TMEM62Q0P6H9 643 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 DRP2Q13474 957 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 OTUD6AQ7L8S5 288 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 PIGOQ8TEQ8 1089 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 CEP170P1Q96L14 293 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 DHX33Q9H6R0 707 aaKnown RBP25■■□□□ 1.59
PTCD3-203ENST00000409783 KDM3AQ9Y4C1 1321 aa25■■□□□ 1.59
PTCD3-203ENST00000409783 BRD1O95696 1058 aa24.99■■□□□ 1.59
PTCD3-203ENST00000409783 CCT6AP40227 531 aaKnown RBP24.99■■□□□ 1.59
PTCD3-203ENST00000409783 GRIN1Q05586 938 aa24.99■■□□□ 1.59
PTCD3-203ENST00000409783 PLEKHG4Q58EX7 1191 aa24.99■■□□□ 1.59
PTCD3-203ENST00000409783 XKR9Q5GH70 373 aa24.99■■□□□ 1.59
PTCD3-203ENST00000409783 FBXO47Q5MNV8 452 aa24.99■■□□□ 1.59
PTCD3-203ENST00000409783 IER5Q5VY09 327 aa24.99■■□□□ 1.59
PTCD3-203ENST00000409783 HAUS3Q68CZ6 603 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms