RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 KCTD17Q8N5Z5 321 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 MYRIPQ8NFW9 859 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 NPLOC4Q8TAT6 608 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 TCEAL9Q9UHQ7 104 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 WDR81Q562E7 1941 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 UQCRHLA0A096LP55 91 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 UQCRHP07919 91 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 LRRC63Q05C16 580 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 CTTNQ14247 550 aaKnown RBP25.03■■□□□ 1.6
CDX1-201ENST00000231656 ZNF746Q6NUN9 644 aaPredicted RBP25.03■■□□□ 1.6
CDX1-201ENST00000231656 JPH1Q9HDC5 661 aaPredicted RBP25.03■■□□□ 1.6
CDX1-201ENST00000231656 SLC5A4Q9NY91 659 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 SLC9A2Q9UBY0 812 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 SAMM50Q9Y512 469 aa25.03■■□□□ 1.6
CDX1-201ENST00000231656 A0A1W2PQC6 194 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 WDR64B1ANS9 1081 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 TNPO2O14787 897 aaKnown RBP25.02■■□□□ 1.6
CDX1-201ENST00000231656 CCP110O43303 1012 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 CTGFP29279 349 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 FXR1P51114 621 aaKnown RBP eCLIP25.02■■□□□ 1.6
CDX1-201ENST00000231656 JAK3P52333 1124 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 LRRC41Q15345 812 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 TPH2Q8IWU9 490 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 MYOCDQ8IZQ8 938 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 NEK9Q8TD19 979 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 TUBGCP2Q9BSJ2 902 aa25.02■■□□□ 1.6
CDX1-201ENST00000231656 UBA1P22314 1058 aaKnown RBP25.01■■□□□ 1.59
CDX1-201ENST00000231656 CASP14P31944 242 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 SFNP31947 248 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 TRIM14Q14142 442 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 KCNV1Q6PIU1 500 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 CYFIP1Q7L576 1253 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 CPLX3Q8WVH0 158 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 USP6NLQ92738 828 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 CCDC51Q96ER9 411 aa25.01■■□□□ 1.59
CDX1-201ENST00000231656 ARIH2O95376 493 aa25■■□□□ 1.59
CDX1-201ENST00000231656 TBC1D8O95759 1140 aa25■■□□□ 1.59
CDX1-201ENST00000231656 P4HBP07237 508 aaKnown RBP25■■□□□ 1.59
CDX1-201ENST00000231656 HOXC6P09630 235 aa25■■□□□ 1.59
CDX1-201ENST00000231656 MUTP22033 750 aa25■■□□□ 1.59
CDX1-201ENST00000231656 FECHP22830 423 aa25■■□□□ 1.59
CDX1-201ENST00000231656 ZCWPW2Q504Y3 356 aa25■■□□□ 1.59
CDX1-201ENST00000231656 CNGA4Q8IV77 575 aa25■■□□□ 1.59
CDX1-201ENST00000231656 BANK1Q8NDB2 785 aa25■■□□□ 1.59
CDX1-201ENST00000231656 EEF2KMTQ96G04 330 aa25■■□□□ 1.59
CDX1-201ENST00000231656 LXNQ9BS40 222 aa25■■□□□ 1.59
CDX1-201ENST00000231656 TINF2Q9BSI4 451 aa25■■□□□ 1.59
CDX1-201ENST00000231656 FGFBP2Q9BYJ0 223 aa25■■□□□ 1.59
CDX1-201ENST00000231656 CDKN2AIPQ9NXV6 580 aaPredicted RBP25■■□□□ 1.59
CDX1-201ENST00000231656 WRAP73Q9P2S5 460 aaPredicted RBP25■■□□□ 1.59
CDX1-201ENST00000231656 GJD2Q9UKL4 321 aa25■■□□□ 1.59
CDX1-201ENST00000231656 ZSWIM8A7E2V4 1837 aa25■■□□□ 1.59
CDX1-201ENST00000231656 SORBS3O60504 671 aa25■■□□□ 1.59
CDX1-201ENST00000231656 EYA4O95677 639 aa25■■□□□ 1.59
CDX1-201ENST00000231656 SNAI1O95863 264 aaPredicted RBP25■■□□□ 1.59
CDX1-201ENST00000231656 DNM2P50570 870 aa25■■□□□ 1.59
CDX1-201ENST00000231656 LACTBP83111 547 aaPredicted RBP25■■□□□ 1.59
CDX1-201ENST00000231656 CACNB1Q02641 598 aaPredicted RBP25■■□□□ 1.59
CDX1-201ENST00000231656 GIT2Q14161 759 aa25■■□□□ 1.59
CDX1-201ENST00000231656 LY6KQ17RY6 165 aa25■■□□□ 1.59
CDX1-201ENST00000231656 SMAP1Q8IYB5 467 aaPredicted RBP25■■□□□ 1.59
CDX1-201ENST00000231656 RDM1Q8NG50 284 aa25■■□□□ 1.59
CDX1-201ENST00000231656 NAA15Q9BXJ9 866 aaKnown RBP25■■□□□ 1.59
CDX1-201ENST00000231656 CFHR5Q9BXR6 569 aa25■■□□□ 1.59
CDX1-201ENST00000231656 DDX41Q9UJV9 622 aaKnown RBP25■■□□□ 1.59
CDX1-201ENST00000231656 TELO2Q9Y4R8 837 aa25■■□□□ 1.59
CDX1-201ENST00000231656 KIF2AO00139 706 aaPredicted RBP24.99■■□□□ 1.59
CDX1-201ENST00000231656 KRT18P05783 430 aaKnown RBP24.99■■□□□ 1.59
CDX1-201ENST00000231656 NEDD9Q14511 834 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 LRRC55Q6ZSA7 311 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 REXO1L1PQ8IX06 675 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 SOCS4Q8WXH5 440 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 VTA1Q9NP79 307 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 PDGFCQ9NRA1 345 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 RNF186Q9NXI6 227 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 PCDHA10Q9Y5I2 948 aa24.99■■□□□ 1.59
CDX1-201ENST00000231656 TRPA1O75762 1119 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 TPM1P09493 284 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 PRKCSHP14314 528 aaPredicted RBP24.98■■□□□ 1.59
CDX1-201ENST00000231656 ACTR2P61160 394 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 SP4Q02446 784 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 HERC4Q5GLZ8 1057 aaPredicted RBP24.98■■□□□ 1.59
CDX1-201ENST00000231656 MIIPQ5JXC2 388 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 CCDC62Q6P9F0 684 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 MSL3Q8N5Y2 521 aaKnown RBP24.98■■□□□ 1.59
CDX1-201ENST00000231656 KATNBL1Q9H079 304 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 PAXBP1Q9Y5B6 917 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 SYNGAP1Q96PV0 1343 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 LOXHD1Q8IVV2 1947 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 RNF225M0QZC1 329 aaPredicted RBP24.98■■□□□ 1.59
CDX1-201ENST00000231656 FARP2O94887 1054 aaPredicted RBP24.98■■□□□ 1.59
CDX1-201ENST00000231656 FGFR1OPO95684 399 aaKnown RBP24.98■■□□□ 1.59
CDX1-201ENST00000231656 PSMC4P43686 418 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 MTIF2P46199 727 aaKnown RBP24.98■■□□□ 1.59
CDX1-201ENST00000231656 FCGRTP55899 365 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 RAD51AP2Q09MP3 1159 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 TAPT1Q6NXT6 567 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 SCFD2Q8WU76 684 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 TSG101Q99816 390 aa24.98■■□□□ 1.59
CDX1-201ENST00000231656 REEP2Q9BRK0 252 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms