RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C RPS24BP0CX32 135 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C BUB3P26449 341 aa1.37□□□□□ -2.19
VPS54YDR027C FAU1P40099 211 aa1.37□□□□□ -2.19
VPS54YDR027C ELP2P42935 788 aa1.37□□□□□ -2.19
VPS54YDR027C RPT4P53549 437 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C CUE5Q08412 411 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C MTR10Q99189 972 aa1.37□□□□□ -2.19
VPS54YDR027C BEM2P39960 2167 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C ILV5P06168 395 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C LEU4P06208 619 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C SPO7P18410 259 aa1.36□□□□□ -2.19
VPS54YDR027C RPI1P23250 407 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C RVS161P25343 265 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C POT1P27796 417 aaKnown RBP RIP-Chip data1.36□□□□□ -2.19not detected
VPS54YDR027C MSP1P28737 362 aa1.36□□□□□ -2.19
VPS54YDR027C APE2P32454 952 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C YCR041WP37265 110 aa1.36□□□□□ -2.19
VPS54YDR027C ZTA1P38230 334 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C VHS2P40463 436 aa1.36□□□□□ -2.19
VPS54YDR027C SIM1P40472 476 aa1.36□□□□□ -2.19
VPS54YDR027C TRS85P46944 698 aa1.36□□□□□ -2.19
VPS54YDR027C PCP1P53259 346 aa1.36□□□□□ -2.19
VPS54YDR027C SHY1P53266 389 aa1.36□□□□□ -2.19
VPS54YDR027C PRP42Q03776 544 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C YDR387CQ04162 555 aa1.36□□□□□ -2.19
VPS54YDR027C ESA1Q08649 445 aa1.36□□□□□ -2.19
VPS54YDR027C PGC1Q08959 321 aa1.36□□□□□ -2.19
VPS54YDR027C SMF3Q12078 473 aaPredicted RBP1.36□□□□□ -2.19
VPS54YDR027C RBD2Q12270 262 aa1.36□□□□□ -2.19
VPS54YDR027C SCEIP03882 235 aa1.36□□□□□ -2.19
VPS54YDR027C IMA3P0CW40 589 aa1.36□□□□□ -2.19
VPS54YDR027C IMA4P0CW41 589 aa1.36□□□□□ -2.19
VPS54YDR027C HEM15P16622 393 aa1.36□□□□□ -2.19
VPS54YDR027C DAP2P18962 818 aa1.36□□□□□ -2.19
VPS54YDR027C ECM25P32525 599 aa1.36□□□□□ -2.19
VPS54YDR027C ANP1P32629 500 aa1.36□□□□□ -2.19
VPS54YDR027C CBP4P37267 147 aa1.36□□□□□ -2.19
VPS54YDR027C YSW1P38280 609 aa1.36□□□□□ -2.19
VPS54YDR027C STP2P38704 541 aa1.36□□□□□ -2.19
VPS54YDR027C ISC1P40015 477 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C YIF1P53845 314 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C MEH1Q02205 184 aa1.36□□□□□ -2.19
VPS54YDR027C RNY1Q02933 434 aaKnown RBP1.36□□□□□ -2.19
VPS54YDR027C UBX2Q04228 584 aa1.36□□□□□ -2.19
VPS54YDR027C HSP31Q04432 237 aa1.36□□□□□ -2.19
VPS54YDR027C IMA2Q08295 589 aa1.36□□□□□ -2.19
VPS54YDR027C AEP3Q12089 606 aa1.36□□□□□ -2.19
VPS54YDR027C BRR1Q99177 341 aaPredicted RBP1.36□□□□□ -2.19
VPS54YDR027C ADE4P04046 510 aaKnown RBP1.35□□□□□ -2.19
VPS54YDR027C REC114P32841 428 aa1.35□□□□□ -2.19
VPS54YDR027C RRN10P38204 145 aa1.35□□□□□ -2.19
VPS54YDR027C GPI16P38875 610 aa1.35□□□□□ -2.19
VPS54YDR027C MLH1P38920 769 aa1.35□□□□□ -2.19
VPS54YDR027C GCD10P41814 478 aa1.35□□□□□ -2.19
VPS54YDR027C PHO86P46956 311 aa1.35□□□□□ -2.19
VPS54YDR027C PHB2P50085 310 aa1.35□□□□□ -2.19
VPS54YDR027C NCS2P53923 493 aaPredicted RBP1.35□□□□□ -2.19
VPS54YDR027C YMR027WQ04371 470 aa1.35□□□□□ -2.19
VPS54YDR027C SNT309Q06091 175 aaPredicted RBP1.35□□□□□ -2.19
VPS54YDR027C CCH1P50077 2039 aa1.35□□□□□ -2.19
VPS54YDR027C GYP6P32806 458 aa1.35□□□□□ -2.19
VPS54YDR027C FRE2P36033 711 aa1.35□□□□□ -2.19
VPS54YDR027C LAS1P36146 502 aaPredicted RBP1.35□□□□□ -2.19
VPS54YDR027C ASC1P38011 319 aaKnown RBP1.35□□□□□ -2.19
VPS54YDR027C SIF2P38262 535 aa1.35□□□□□ -2.19
VPS54YDR027C VAB2P40003 282 aa1.35□□□□□ -2.19
VPS54YDR027C CHS6P40955 746 aa1.35□□□□□ -2.19
VPS54YDR027C GWT1P47026 490 aa1.35□□□□□ -2.19
VPS54YDR027C YJR011CP47086 261 aaPredicted RBP1.35□□□□□ -2.19
VPS54YDR027C ROG1P53118 685 aa1.35□□□□□ -2.19
VPS54YDR027C CAF40P53829 373 aa1.35□□□□□ -2.19
VPS54YDR027C TOF1P53840 1238 aa1.35□□□□□ -2.19
VPS54YDR027C DSL1P53847 754 aa1.35□□□□□ -2.19
VPS54YDR027C GIP3Q03016 1276 aa1.35□□□□□ -2.19
VPS54YDR027C PML1Q07930 204 aaPredicted RBP1.35□□□□□ -2.19
VPS54YDR027C MED2Q12124 431 aa1.35□□□□□ -2.19
VPS54YDR027C HSP42Q12329 375 aa1.35□□□□□ -2.19
VPS54YDR027C MSB2P32334 1306 aa1.35□□□□□ -2.19
VPS54YDR027C FLO11P08640 1367 aa1.35□□□□□ -2.19
VPS54YDR027C ADH2P00331 348 aaKnown RBP1.34□□□□□ -2.19
VPS54YDR027C RPL43AP0CX25 92 aaKnown RBP1.34□□□□□ -2.19
VPS54YDR027C RPL43BP0CX26 92 aa1.34□□□□□ -2.19
VPS54YDR027C RIM1P32445 135 aaKnown RBP1.34□□□□□ -2.19
VPS54YDR027C REE1P40893 198 aa1.34□□□□□ -2.19
VPS54YDR027C MDE1P47095 244 aa1.34□□□□□ -2.19
VPS54YDR027C ATP22P50273 684 aaPredicted RBP1.34□□□□□ -2.19
VPS54YDR027C YIP1P53039 248 aa1.34□□□□□ -2.19
VPS54YDR027C EOS1P53938 366 aa1.34□□□□□ -2.19
VPS54YDR027C PIR3Q03180 325 aa1.34□□□□□ -2.19
VPS54YDR027C PPM1Q04081 328 aa1.34□□□□□ -2.19
VPS54YDR027C MRPL35Q06678 367 aa1.34□□□□□ -2.19
VPS54YDR027C SKS1Q12505 502 aa1.34□□□□□ -2.19
VPS54YDR027C FKS1P38631 1876 aaKnown RBP1.34□□□□□ -2.19
VPS54YDR027C PDE2P06776 526 aa1.34□□□□□ -2.2
VPS54YDR027C CTR86P25355 563 aa1.34□□□□□ -2.2
VPS54YDR027C NIP1P32497 812 aaKnown RBP1.34□□□□□ -2.2
VPS54YDR027C SDH3P33421 198 aa1.34□□□□□ -2.2
VPS54YDR027C YKL097CP34245 136 aa1.34□□□□□ -2.2
VPS54YDR027C STN1P38960 494 aa1.34□□□□□ -2.2
VPS54YDR027C HMS2P47175 358 aa1.34□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 108.5 ms