RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 POTEBQ6S5H4 581 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 RAB11FIP4Q86YS3 637 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 SMAP1Q8IYB5 467 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-211ENST00000597968 RASEFQ8IZ41 740 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 BICD2Q8TD16 824 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 CRYGNQ8WXF5 182 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 NECAB3Q96P71 396 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-211ENST00000597968 OSBPL7Q9BZF2 842 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 C6orf50Q9HD87 102 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 FAM217BQ9NTX9 383 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-211ENST00000597968 RALGAPA2Q2PPJ7 1873 aa15.5■□□□□ 0.07
TRIM28-211ENST00000597968 DOCK5Q9H7D0 1870 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 ARP10275 920 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 SCG2P13521 617 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 ITGB3BPQ13352 177 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-211ENST00000597968 ADCK5Q3MIX3 580 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 ZNF484Q5JVG2 852 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 MIS18BP1Q6P0N0 1132 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 ABHD15Q6UXT9 468 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 NPAS4Q8IUM7 802 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 CMTR2Q8IYT2 770 aaKnown RBP15.49■□□□□ 0.07
TRIM28-211ENST00000597968 CRIPAKQ8N1N5 446 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 CYP2W1Q8TAV3 490 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 ATP8B4Q8TF62 1192 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 AGXT2Q9BYV1 514 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 CELF4Q9BZC1 486 aaKnown RBP15.49■□□□□ 0.07
TRIM28-211ENST00000597968 PKD2L1Q9P0L9 805 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 PRKAG3Q9UGI9 489 aa15.49■□□□□ 0.07
TRIM28-211ENST00000597968 GRXCR2A6NFK2 248 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 IPO5O00410 1097 aaKnown RBP15.48■□□□□ 0.07
TRIM28-211ENST00000597968 PRPF3O43395 683 aaKnown RBP15.48■□□□□ 0.07
TRIM28-211ENST00000597968 GPR37L1O60883 481 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 LINC00271P0C7V0 271 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 KCNA5P22460 613 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 PSMA5P28066 241 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 CDC27P30260 824 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 CTNNB1P35222 781 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 IGBP1P78318 339 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 PAK2Q13177 524 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 BTG3Q14201 252 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-211ENST00000597968 ZNF746Q6NUN9 644 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-211ENST00000597968 MTHFD1LQ6UB35 978 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 FAM178BQ8IXR5 827 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 FAM177A1Q8N128 213 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-211ENST00000597968 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-211ENST00000597968 PPP2R3CQ969Q6 453 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 TCEAL9Q9UHQ7 104 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 PADI3Q9ULW8 664 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 CEP131Q9UPN4 1083 aa15.48■□□□□ 0.07
TRIM28-211ENST00000597968 IGLV3-22A0A075B6J6 115 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 PI4K2BG5E9Z4 385 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 MMP1P03956 469 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 CD52P31358 61 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 CIITAP33076 1130 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 HSPA4P34932 840 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 KRT76Q01546 638 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 PTCRAQ6ISU1 281 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-211ENST00000597968 BLOC1S2Q6QNY1 142 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 PLA2G4DQ86XP0 818 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 REXO1Q8N1G1 1221 aaKnown RBP15.47■□□□□ 0.07
TRIM28-211ENST00000597968 CCDC148Q8NFR7 591 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 BBXQ8WY36 941 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-211ENST00000597968 RNF26Q9BY78 433 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-211ENST00000597968 FAM49AQ9H0Q0 323 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-211ENST00000597968 AGO3Q9H9G7 860 aaKnown RBP15.47■□□□□ 0.07
TRIM28-211ENST00000597968 ZNF302Q9NR11 478 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 C1orf112Q9NSG2 853 aa15.47■□□□□ 0.07
TRIM28-211ENST00000597968 MAFBQ9Y5Q3 323 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-211ENST00000597968 FSD2A1L4K1 749 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 FAM86B1E9PN63 330 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 BACH1O14867 736 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 DHX15O43143 795 aaKnown RBP15.46■□□□□ 0.07
TRIM28-211ENST00000597968 REC8O95072 547 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 FAM86B2P0C5J1 330 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 KLRC1P26715 233 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 ADD1P35611 737 aaKnown RBP15.46■□□□□ 0.07
TRIM28-211ENST00000597968 EVCP57679 992 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 AKAP17AQ02040 695 aaKnown RBP15.46■□□□□ 0.07
TRIM28-211ENST00000597968 CTC1Q2NKJ3 1217 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 TCEAL5Q5H9L2 206 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 TMEM31Q5JXX7 168 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 GJD3Q8N144 294 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 TCEANC2Q96MN5 208 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 ZNF577Q9BSK1 485 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 C22orf23Q9BZE7 217 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 TTC3P53804 2025 aa15.46■□□□□ 0.07
TRIM28-211ENST00000597968 TCF20Q9UGU0 1960 aaKnown RBP15.45■□□□□ 0.06
TRIM28-211ENST00000597968 GPR182O15218 404 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 CCNE2O96020 404 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 ALADP13716 330 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 PDXDC2PQ6P474 469 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 Q6ZUG5 572 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 LINC01599Q8WXQ3 324 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 PGBD1Q96JS3 809 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 FAM167AQ96KS9 214 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 SH3GLB2Q9NR46 395 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 PCDHA10Q9Y5I2 948 aa15.45■□□□□ 0.06
TRIM28-211ENST00000597968 MAGEB2O15479 319 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 RPS6KA5O75582 802 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 PSAPP07602 524 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms