RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 Q7L0L9 218 aa22.71■■□□□ 1.23
SS18-218ENST00000581021 TCEAL9Q9UHQ7 104 aa22.71■■□□□ 1.23
SS18-218ENST00000581021 SAMM50Q9Y512 469 aa22.71■■□□□ 1.23
SS18-218ENST00000581021 CHD9Q3L8U1 2897 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 RRN3P2A6NIE6 340 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 CHRNA1P02708 482 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 MCM2P49736 904 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 JAK3P52333 1124 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 SMAD3P84022 425 aaKnown RBP22.7■■□□□ 1.22
SS18-218ENST00000581021 SPIRE1Q08AE8 756 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 TAF2Q6P1X5 1199 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 TRMT1LQ7Z2T5 733 aaKnown RBP22.7■■□□□ 1.22
SS18-218ENST00000581021 RPAINQ86UA6 219 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 DNAJB3Q8WWF6 145 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 FAM20AQ96MK3 541 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 FTOQ9C0B1 505 aaKnown RBP eCLIP22.7■■□□□ 1.22
SS18-218ENST00000581021 KAT6AQ92794 2004 aa22.7■■□□□ 1.22
SS18-218ENST00000581021 HBP1O60381 514 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 CAND2O75155 1236 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 STBD1O95210 358 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 SFNP31947 248 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 PBX2P40425 430 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 PRKCEQ02156 737 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 MGAT3Q09327 533 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 PPP2R5CQ13362 524 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 SAFBQ15424 915 aaKnown RBP eCLIP22.69■■□□□ 1.22
SS18-218ENST00000581021 FAM26DQ5JW98 314 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 MTHFD1LQ6UB35 978 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 MIER3Q7Z3K6 550 aa22.69■■□□□ 1.22
SS18-218ENST00000581021 FAM49AQ9H0Q0 323 aaPredicted RBP22.69■■□□□ 1.22
SS18-218ENST00000581021 FOXP1Q9H334 677 aaPredicted RBP22.69■■□□□ 1.22
SS18-218ENST00000581021 TMEM150BA6NC51 233 aa22.68■■□□□ 1.22
SS18-218ENST00000581021 TBX3O15119 743 aa22.68■■□□□ 1.22
SS18-218ENST00000581021 MKRN4PQ13434 485 aaPredicted RBP22.68■■□□□ 1.22
SS18-218ENST00000581021 GPR153Q6NV75 609 aa22.68■■□□□ 1.22
SS18-218ENST00000581021 RDM1Q8NG50 284 aa22.68■■□□□ 1.22
SS18-218ENST00000581021 BBXQ8WY36 941 aaPredicted RBP22.68■■□□□ 1.22
SS18-218ENST00000581021 NAP1L4Q99733 375 aaKnown RBP22.68■■□□□ 1.22
SS18-218ENST00000581021 TMEM60Q9H2L4 133 aa22.68■■□□□ 1.22
SS18-218ENST00000581021 PCDHA2Q9Y5H9 948 aa22.68■■□□□ 1.22
SS18-218ENST00000581021 COL1A2P08123 1366 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 PTPRSQ13332 1948 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.67■■□□□ 1.22
SS18-218ENST00000581021 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.67■■□□□ 1.22
SS18-218ENST00000581021 ZBBXA8MT70 800 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 PARNO95453 639 aaKnown RBP22.67■■□□□ 1.22
SS18-218ENST00000581021 C22orf31O95567 290 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 OATP04181 439 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 ATP2B1P20020 1258 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 GJB2P29033 226 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 NOSTRINQ8IVI9 506 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 CKAP2LQ8IYA6 745 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 BANK1Q8NDB2 785 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 PBX4Q9BYU1 374 aa22.67■■□□□ 1.22
SS18-218ENST00000581021 WRAP73Q9P2S5 460 aaPredicted RBP22.67■■□□□ 1.22
SS18-218ENST00000581021 MYH9P35579 1960 aaKnown RBP22.67■■□□□ 1.22
SS18-218ENST00000581021 KLRC1P26715 233 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 TMEM62Q0P6H9 643 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 CUL4AQ13619 759 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 NBR1Q14596 966 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 PLEKHG4Q58EX7 1191 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 ZNF484Q5JVG2 852 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 CNKSR3Q6P9H4 555 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 DBF4BQ8NFT6 615 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 MTMR9Q96QG7 549 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 TTYH1Q9H313 450 aaPredicted RBP22.66■■□□□ 1.22
SS18-218ENST00000581021 SLC4A7Q9Y6M7 1214 aa22.66■■□□□ 1.22
SS18-218ENST00000581021 NEMFO60524 1076 aa22.65■■□□□ 1.22
SS18-218ENST00000581021 DNAJB2P25686 324 aa22.65■■□□□ 1.22
SS18-218ENST00000581021 U2AF2P26368 475 aaKnown RBP eCLIP22.65■■□□□ 1.221e-7■■■□□ 18.2
SS18-218ENST00000581021 RABGGTBP53611 331 aa22.65■■□□□ 1.22
SS18-218ENST00000581021 WDR5P61964 334 aaKnown RBP22.65■■□□□ 1.22
SS18-218ENST00000581021 MRPS6P82932 125 aaKnown RBP22.65■■□□□ 1.22
SS18-218ENST00000581021 CALCRLQ16602 461 aa22.65■■□□□ 1.22
SS18-218ENST00000581021 TMCO2Q7Z6W1 182 aaPredicted RBP22.65■■□□□ 1.22
SS18-218ENST00000581021 DEFB123Q8N688 67 aa22.65■■□□□ 1.22
SS18-218ENST00000581021 MTIF3Q9H2K0 278 aaKnown RBP22.65■■□□□ 1.22
SS18-218ENST00000581021 YBX2Q9Y2T7 364 aaKnown RBP22.65■■□□□ 1.22
SS18-218ENST00000581021 CDY2AQ9Y6F7 541 aa22.65■■□□□ 1.22
SS18-218ENST00000581021 GBF1Q92538 1859 aa22.64■■□□□ 1.22
SS18-218ENST00000581021 SMIM35A0A1B0GVV1 85 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 GHRP10912 638 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 ACTN1P12814 892 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 MCM7P33993 719 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 TOB1P50616 345 aaPredicted RBP22.64■■□□□ 1.21
SS18-218ENST00000581021 DEFB103AP81534 67 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 LPIN1Q14693 890 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 KIAA0319LQ8IZA0 1049 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 FAM167AQ96KS9 214 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 CEP89Q96ST8 783 aa22.64■■□□□ 1.21
SS18-218ENST00000581021 CHD7Q9P2D1 2997 aa22.63■■□□□ 1.21
SS18-218ENST00000581021 BAIAP3O94812 1187 aa22.63■■□□□ 1.21
SS18-218ENST00000581021 MYOGP15173 224 aa22.63■■□□□ 1.21
SS18-218ENST00000581021 ATP2A2P16615 1042 aaKnown RBP22.63■■□□□ 1.21
SS18-218ENST00000581021 TARBP2Q15633 366 aaKnown RBP22.63■■□□□ 1.21
SS18-218ENST00000581021 LINC01465Q8N7H1 131 aa22.63■■□□□ 1.21
SS18-218ENST00000581021 TNPO1Q92973 898 aaKnown RBP22.63■■□□□ 1.21
SS18-218ENST00000581021 FAM161BQ96MY7 647 aa22.63■■□□□ 1.21
SS18-218ENST00000581021 SH2D3AQ9BRG2 576 aa22.63■■□□□ 1.21
SS18-218ENST00000581021 ZNF174Q15697 407 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms