RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 RANBP2P49792 3224 aaKnown RBP14.62□□□□□ -0.07
CLK3-224ENST00000568605 ZNF200P98182 395 aaPredicted RBP14.62□□□□□ -0.07
CLK3-224ENST00000568605 ZNF484Q5JVG2 852 aa14.62□□□□□ -0.07
CLK3-224ENST00000568605 TTC38Q5R3I4 469 aa14.62□□□□□ -0.07
CLK3-224ENST00000568605 DHX38Q92620 1227 aaKnown RBP14.62□□□□□ -0.07
CLK3-224ENST00000568605 SNX21Q969T3 373 aa14.62□□□□□ -0.07
CLK3-224ENST00000568605 INTS4Q96HW7 963 aaKnown RBP14.62□□□□□ -0.07
CLK3-224ENST00000568605 RALGAPA2Q2PPJ7 1873 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 MBLAC1A4D2B0 266 aaPredicted RBP14.61□□□□□ -0.07
CLK3-224ENST00000568605 M0QZ92 97 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 OATP04181 439 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 ATP2B1P20020 1258 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 MCM7P33993 719 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 ADAM17P78536 824 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 PRKCEQ02156 737 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 SHHQ15465 462 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 LRIT3Q3SXY7 679 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 LARP1BQ659C4 914 aaKnown RBP14.61□□□□□ -0.07
CLK3-224ENST00000568605 DEFB128Q7Z7B8 93 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 NEK9Q8TD19 979 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 GJA10Q969M2 543 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.61□□□□□ -0.072e-8■■■□□ 17.3
CLK3-224ENST00000568605 NRBP2Q9NSY0 501 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 VAV3Q9UKW4 847 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 PCDHA12Q9UN75 941 aa14.61□□□□□ -0.07
CLK3-224ENST00000568605 RSPH10B2B2RC85 870 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 FGBP02675 491 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 HSP90AA1P07900 732 aaKnown RBP14.6□□□□□ -0.07
CLK3-224ENST00000568605 RSPH10BP0C881 870 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 ACRP10323 421 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 HIC1Q14526 733 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 TRIM71Q2Q1W2 868 aaKnown RBP14.6□□□□□ -0.07
CLK3-224ENST00000568605 RILPL1Q5EBL4 403 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 TMEM240Q5SV17 173 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 C9orf50Q5SZB4 431 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 ZNF618Q5T7W0 954 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 NCAPH2Q6IBW4 605 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 B3GNT9Q6UX72 402 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 RPAINQ86UA6 219 aa14.6□□□□□ -0.07
CLK3-224ENST00000568605 FTOQ9C0B1 505 aaKnown RBP eCLIP14.6□□□□□ -0.07
CLK3-224ENST00000568605 SEPT9Q9UHD8 586 aaPredicted RBP14.6□□□□□ -0.07
CLK3-224ENST00000568605 KIF28PB7ZC32 967 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 BAIAP3O94812 1187 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 P4HBP07237 508 aaKnown RBP14.59□□□□□ -0.07
CLK3-224ENST00000568605 CTSHP09668 335 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 OR52Z1P0C646 297 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 EPHB4P54760 987 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 PSMC5P62195 406 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 TMEM266Q2M3C6 531 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 IER5Q5VY09 327 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 CNKSR3Q6P9H4 555 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 ZNF365Q70YC5 407 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 HAS1Q92839 578 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 WNT8BQ93098 351 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 TTC12Q9H892 705 aaPredicted RBP14.59□□□□□ -0.07
CLK3-224ENST00000568605 PCDHA2Q9Y5H9 948 aa14.59□□□□□ -0.07
CLK3-224ENST00000568605 SMIM35A0A1B0GVV1 85 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 VPS37CA5D8V6 355 aaPredicted RBP14.58□□□□□ -0.08
CLK3-224ENST00000568605 ZBBXA8MT70 800 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 LAD1O00515 517 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 MAGEB2O15479 319 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 EFCAB14O75071 495 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 TXKP42681 527 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 QARSP47897 775 aaKnown RBP14.58□□□□□ -0.08
CLK3-224ENST00000568605 EPHA7Q15375 998 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 XKR3Q5GH77 459 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 MARCH8Q5T0T0 291 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 MTHFD1LQ6UB35 978 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 TRMT1LQ7Z2T5 733 aaKnown RBP14.58□□□□□ -0.08
CLK3-224ENST00000568605 BRAPQ7Z569 592 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 BANK1Q8NDB2 785 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 TRAPPC12Q8WVT3 735 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 DNAJB3Q8WWF6 145 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 HERVK_113Q902F9 699 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 MAP7D2Q96T17 732 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 RAB34Q9BZG1 259 aa14.58□□□□□ -0.08
CLK3-224ENST00000568605 FAM49AQ9H0Q0 323 aaPredicted RBP14.58□□□□□ -0.08
CLK3-224ENST00000568605 CXCL10P02778 98 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 TMOD1P28289 359 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 KCNJ6P48051 423 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 FXR1P51114 621 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLK3-224ENST00000568605 MRPS6P82932 125 aaKnown RBP14.57□□□□□ -0.08
CLK3-224ENST00000568605 SPIRE1Q08AE8 756 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 TBC1D8BQ0IIM8 1120 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 ZNF174Q15697 407 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 UGCGQ16739 394 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 RUFY4Q6ZNE9 571 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 OTOP2Q7RTS6 562 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 NME8Q8N427 588 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 ERMNQ8TAM6 284 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 CCDC43Q96MW1 224 aaKnown RBP14.57□□□□□ -0.08
CLK3-224ENST00000568605 MTMR9Q96QG7 549 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 JPH2Q9BR39 696 aaPredicted RBP14.57□□□□□ -0.08
CLK3-224ENST00000568605 LXNQ9BS40 222 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 PPME1Q9Y570 386 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 KIAA1671Q9BY89 1806 aa14.57□□□□□ -0.08
CLK3-224ENST00000568605 EML1O00423 815 aa14.56□□□□□ -0.08
CLK3-224ENST00000568605 WNT7AO00755 349 aa14.56□□□□□ -0.08
CLK3-224ENST00000568605 ZNF862O60290 1169 aa14.56□□□□□ -0.08
CLK3-224ENST00000568605 NBNO60934 754 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms