RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 DOCK5Q9H7D0 1870 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 MED24O75448 989 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 CABYRO75952 493 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 F2P00734 622 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 SPATA31C1P0DKV0 1188 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 RPA1P27694 616 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 PSEN2P49810 448 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 UGCGQ16739 394 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 ADALQ6DHV7 355 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 USP49Q70CQ1 688 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 TRMT1LQ7Z2T5 733 aaKnown RBP12.99□□□□□ -0.33
YBX3-213ENST00000542641 CABP7Q86V35 215 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 RASSF8Q8NHQ8 419 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 SYMPKQ92797 1274 aaKnown RBP12.99□□□□□ -0.33
YBX3-213ENST00000542641 KAT2BQ92831 832 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 CDK5RAP3Q96JB5 506 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 GLT1D1Q96MS3 346 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 MMTAG2Q9BU76 263 aaKnown RBP12.99□□□□□ -0.33
YBX3-213ENST00000542641 KATNAL1Q9BW62 490 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 PHF24Q9UPV7 400 aa12.99□□□□□ -0.33
YBX3-213ENST00000542641 IGSF9BQ9UPX0 1349 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 A0A1W2PQ45 241 aaPredicted RBP12.98□□□□□ -0.33
YBX3-213ENST00000542641 A0A1W2PQY0 241 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 POTEB3A0JP26 581 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 ZNF862O60290 1169 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 EN2P19622 333 aaPredicted RBP12.98□□□□□ -0.33
YBX3-213ENST00000542641 ATP4AP20648 1035 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 PSMC6P62333 389 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 MFSD10Q14728 455 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 KIAA0753Q2KHM9 967 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 POTEBQ6S5H4 581 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 SHC4Q6S5L8 630 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 C4orf19Q8IY42 314 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 CALML4Q96GE6 196 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 CCSER1Q9C0I3 900 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 SENP6Q9GZR1 1112 aaPredicted RBP12.98□□□□□ -0.33
YBX3-213ENST00000542641 RNPEPQ9H4A4 650 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 NRBP2Q9NSY0 501 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 FAM13BQ9NYF5 915 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 WRAP73Q9P2S5 460 aaPredicted RBP12.98□□□□□ -0.33
YBX3-213ENST00000542641 CCDC39Q9UFE4 941 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 KIAA1024Q9UPX6 916 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 TRPC6Q9Y210 931 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 PCDHB13Q9Y5F0 798 aa12.98□□□□□ -0.33
YBX3-213ENST00000542641 KDM3AQ9Y4C1 1321 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 CCDC85CA6NKD9 419 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 DDX11L8A8MPP1 907 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 HAS3O00219 553 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 SLC26A4O43511 780 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 PRPF40AO75400 957 aaKnown RBP12.97□□□□□ -0.33
YBX3-213ENST00000542641 OATP04181 439 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 MUTP22033 750 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 CMA1P23946 247 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 YWHABP31946 246 aaKnown RBP12.97□□□□□ -0.33
YBX3-213ENST00000542641 PRKCEQ02156 737 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 KARSQ15046 597 aaKnown RBP12.97□□□□□ -0.33
YBX3-213ENST00000542641 PLCB4Q15147 1175 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 ECM1Q16610 540 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 NBPF20Q3BBV1 942 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 XKR3Q5GH77 459 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 RESP18Q5W5W9 173 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 POTEGQ6S5H5 508 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 OTUD6AQ7L8S5 288 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 C7orf31Q8N865 590 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 TMEM87AQ8NBN3 555 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 ATP8B4Q8TF62 1192 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 FAM167AQ96KS9 214 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 NACC1Q96RE7 527 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 PLIN2Q99541 437 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 PANK2Q9BZ23 570 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 NT5C3AQ9H0P0 336 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 STARD7Q9NQZ5 370 aa12.97□□□□□ -0.33
YBX3-213ENST00000542641 DDX19AQ9NUU7 478 aaKnown RBP12.97□□□□□ -0.33
YBX3-213ENST00000542641 A0A087WWV3 80 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 A0A1W2PQ27 194 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 A0A1W2PQ64 194 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 A0A1W2PQD8 194 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 GOLGA6L22H0YM25 854 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 ZBTB39O15060 712 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 HBP1O60381 514 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 LYPLA2O95372 231 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 GRB10Q13322 594 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 ITGA7Q13683 1181 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 FAM47CQ5HY64 1035 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 HYIQ5T013 277 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 PIGOQ8TEQ8 1089 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 DIS3LQ8TF46 1054 aaKnown RBP12.96□□□□□ -0.33
YBX3-213ENST00000542641 PPP1R13LQ8WUF5 828 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 BBXQ8WY36 941 aaPredicted RBP12.96□□□□□ -0.33
YBX3-213ENST00000542641 PAWRQ96IZ0 340 aaKnown RBP12.96□□□□□ -0.33
YBX3-213ENST00000542641 PNMA5Q96PV4 448 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 C11orf49Q9H6J7 331 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 SEPT9Q9UHD8 586 aaPredicted RBP12.96□□□□□ -0.33
YBX3-213ENST00000542641 DNM3Q9UQ16 869 aa12.96□□□□□ -0.33
YBX3-213ENST00000542641 GRIN2DO15399 1336 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 A0A0U1RQG5 324 aaPredicted RBP12.95□□□□□ -0.34
YBX3-213ENST00000542641 A0A1B0GVL5 298 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 TMEM150BA6NC51 233 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 GABBR2O75899 941 aa12.95□□□□□ -0.34
YBX3-213ENST00000542641 STBD1O95210 358 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms