RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W TY2A-LR1P0C2J4 438 aa4.21□□□□□ -1.73
SSH4YKL124W TY2A-FP0CX61 438 aa4.21□□□□□ -1.73
SSH4YKL124W TY2A-GR2P0CX62 438 aa4.21□□□□□ -1.73
SSH4YKL124W CDC26P14724 124 aa4.21□□□□□ -1.73
SSH4YKL124W TY2A-CP25383 438 aa4.21□□□□□ -1.73
SSH4YKL124W SLC1P33333 303 aa4.21□□□□□ -1.73
SSH4YKL124W HES1P35843 434 aa4.21□□□□□ -1.73
SSH4YKL124W RSM22P36056 628 aa4.21□□□□□ -1.73
SSH4YKL124W ATG14P38270 344 aa4.21□□□□□ -1.73
SSH4YKL124W LIN1P38852 340 aaPredicted RBP4.21□□□□□ -1.73
SSH4YKL124W MET30P39014 640 aa4.21□□□□□ -1.73
SSH4YKL124W VRG4P40107 337 aa4.21□□□□□ -1.73
SSH4YKL124W CAB2P40506 365 aa4.21□□□□□ -1.73
SSH4YKL124W MAD2P40958 196 aa4.21□□□□□ -1.73
SSH4YKL124W BPL1P48445 690 aaPredicted RBP4.21□□□□□ -1.73
SSH4YKL124W TRM9P49957 279 aa4.21□□□□□ -1.73
SSH4YKL124W LCL3P53153 274 aa4.21□□□□□ -1.73
SSH4YKL124W EOS1P53938 366 aa4.21□□□□□ -1.73
SSH4YKL124W LSM3P57743 89 aaKnown RBP4.21□□□□□ -1.73
SSH4YKL124W PRP38Q00723 242 aaPredicted RBP4.21□□□□□ -1.73
SSH4YKL124W RNT1Q02555 471 aa4.21□□□□□ -1.73
SSH4YKL124W RNY1Q02933 434 aaKnown RBP4.21□□□□□ -1.73
SSH4YKL124W MRPS17Q03246 237 aaPredicted RBP4.21□□□□□ -1.73
SSH4YKL124W TY2A-DR2Q03483 438 aa4.21□□□□□ -1.73
SSH4YKL124W RRP17Q04031 235 aaPredicted RBP4.21□□□□□ -1.73
SSH4YKL124W ERB1Q04660 807 aaKnown RBP4.21□□□□□ -1.73
SSH4YKL124W HDA3Q06623 655 aa4.21□□□□□ -1.73
SSH4YKL124W NBA1Q08229 501 aaKnown RBP4.21□□□□□ -1.73
SSH4YKL124W TY2A-BQ12260 438 aa4.21□□□□□ -1.73
SSH4YKL124W RBD2Q12270 262 aa4.21□□□□□ -1.73
SSH4YKL124W TY2A-OR2Q12293 438 aa4.21□□□□□ -1.73
SSH4YKL124W TY2A-DR1Q12392 438 aa4.21□□□□□ -1.73
SSH4YKL124W TY2A-OR1Q12439 438 aa4.21□□□□□ -1.73
SSH4YKL124W HBN1Q96VH4 193 aa4.21□□□□□ -1.73
SSH4YKL124W TY2A-DR3Q99303 438 aa4.21□□□□□ -1.73
SSH4YKL124W COX1P00401 534 aa4.21□□□□□ -1.74
SSH4YKL124W RAP1P11938 827 aa4.21□□□□□ -1.74
SSH4YKL124W SEC62P21825 274 aa4.21□□□□□ -1.74
SSH4YKL124W TAH1P25638 111 aaPredicted RBP4.21□□□□□ -1.74
SSH4YKL124W ERG1P32476 496 aaKnown RBP4.21□□□□□ -1.74
SSH4YKL124W PET127P32606 800 aa4.21□□□□□ -1.74
SSH4YKL124W OAF3P36023 863 aa4.21□□□□□ -1.74
SSH4YKL124W YBR138CP38277 524 aa4.21□□□□□ -1.74
SSH4YKL124W UTP9P38882 575 aaKnown RBP4.21□□□□□ -1.74
SSH4YKL124W YHR210CP38893 341 aa4.21□□□□□ -1.74
SSH4YKL124W PRP39P39682 629 aaKnown RBP4.21□□□□□ -1.74
SSH4YKL124W FRT2P39734 528 aa4.21□□□□□ -1.74
SSH4YKL124W FKH2P41813 862 aa4.21□□□□□ -1.74
SSH4YKL124W GZF3P42944 551 aaKnown RBP4.21□□□□□ -1.74
SSH4YKL124W FAR3P46671 204 aa4.21□□□□□ -1.74
SSH4YKL124W SDT1P53078 280 aa4.21□□□□□ -1.74
SSH4YKL124W GTR2P53290 341 aa4.21□□□□□ -1.74
SSH4YKL124W SDH1Q00711 640 aa4.21□□□□□ -1.74
SSH4YKL124W GAS3Q03655 524 aa4.21□□□□□ -1.74
SSH4YKL124W TPP1Q03796 238 aa4.21□□□□□ -1.74
SSH4YKL124W HLR1Q04429 423 aa4.21□□□□□ -1.74
SSH4YKL124W ORM2Q06144 216 aa4.21□□□□□ -1.74
SSH4YKL124W MCA1Q08601 432 aa4.21□□□□□ -1.74
SSH4YKL124W GPB1Q08886 897 aa4.21□□□□□ -1.74
SSH4YKL124W RKM1Q08961 583 aaPredicted RBP4.21□□□□□ -1.74
SSH4YKL124W APC9Q12107 265 aa4.21□□□□□ -1.74
SSH4YKL124W NMD4Q12129 218 aa4.21□□□□□ -1.74
SSH4YKL124W MHT1Q12525 324 aa4.21□□□□□ -1.74
SSH4YKL124W SRV2P17555 526 aaKnown RBP4.2□□□□□ -1.74
SSH4YKL124W TRX3P25372 127 aa4.2□□□□□ -1.74
SSH4YKL124W MGR1P25573 417 aa4.2□□□□□ -1.74
SSH4YKL124W SYP1P25623 870 aaKnown RBP4.2□□□□□ -1.74
SSH4YKL124W YCR051WP25631 222 aa4.2□□□□□ -1.74
SSH4YKL124W YMC1P32331 307 aa4.2□□□□□ -1.74
SSH4YKL124W HBS1P32769 611 aaKnown RBP4.2□□□□□ -1.74
SSH4YKL124W SUI1P32911 108 aaKnown RBP4.2□□□□□ -1.74
SSH4YKL124W MKS1P34072 584 aa4.2□□□□□ -1.74
SSH4YKL124W OAR1P35731 278 aa4.2□□□□□ -1.74
SSH4YKL124W YCR087C-AP37263 153 aa4.2□□□□□ -1.74
SSH4YKL124W ALG3P38179 458 aa4.2□□□□□ -1.74
SSH4YKL124W YBR032WP38223 100 aa4.2□□□□□ -1.74
SSH4YKL124W YDR089WP38966 869 aa4.2□□□□□ -1.74
SSH4YKL124W NTA1P40354 457 aa4.2□□□□□ -1.74
SSH4YKL124W PFK26P40433 827 aaKnown RBP4.2□□□□□ -1.74
SSH4YKL124W PRM2P40534 656 aa4.2□□□□□ -1.74
SSH4YKL124W RLP7P40693 322 aaKnown RBP4.2□□□□□ -1.74
SSH4YKL124W ARF3P40994 183 aaRIP-Chip data4.2□□□□□ -1.74not detected
SSH4YKL124W AZF1P41696 914 aa4.2□□□□□ -1.74
SSH4YKL124W SMK1P41808 388 aa4.2□□□□□ -1.74
SSH4YKL124W YGL176CP46945 554 aa4.2□□□□□ -1.74
SSH4YKL124W ABM1P47146 123 aa4.2□□□□□ -1.74
SSH4YKL124W TOM22P49334 152 aa4.2□□□□□ -1.74
SSH4YKL124W NAS6P50086 228 aa4.2□□□□□ -1.74
SSH4YKL124W MPS1P54199 764 aa4.2□□□□□ -1.74
SSH4YKL124W TVP15Q03860 143 aa4.2□□□□□ -1.74
SSH4YKL124W FAR8Q05040 523 aa4.2□□□□□ -1.74
SSH4YKL124W BSC2Q05611 235 aa4.2□□□□□ -1.74
SSH4YKL124W RRP40Q08285 240 aaKnown RBP4.2□□□□□ -1.74
SSH4YKL124W FMP40Q08968 688 aaPredicted RBP4.2□□□□□ -1.74
SSH4YKL124W MMT2Q08970 484 aa4.2□□□□□ -1.74
SSH4YKL124W YPL066WQ12194 479 aa4.2□□□□□ -1.74
SSH4YKL124W ATG34Q12292 412 aa4.2□□□□□ -1.74
SSH4YKL124W NCA2Q12374 616 aa4.2□□□□□ -1.74
SSH4YKL124W Q0010Q9ZZX9 128 aa4.2□□□□□ -1.74
SSH4YKL124W MEC1P38111 2368 aa4.19□□□□□ -1.74
Retrieved 100 of 5,963 RNA–protein pairs in 138.3 ms