RNA–Protein interactions for RNA: YKL028W

TFA1, Transcript of TFIIE large subunit, yeast

Gene TFA1, Length 1,449 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFA1	YKL028W	CWP1	P28319	239 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	MSS51	P32335	436 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	RAD24	P32641	659 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	SKG6	P32900	734 aa	Predicted RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	YKL071W	P36086	256 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	SBE22	P38814	852 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	PRM9	P39551	298 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	NDC80	P40460	691 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	UTP25	P40498	721 aa	Known RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	YAR1	P46683	200 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YJR154W	P47181	346 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	PMT5	P52867	743 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YGL117W	P53133	265 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	CPR8	P53728	308 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	SMX3	P54999	86 aa	Predicted RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	YVH1	Q02256	364 aa	Known RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	PNG1	Q02890	363 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	AIM33	Q04516	312 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YLR283W	Q05867	314 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	SNT309	Q06091	175 aa	Predicted RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	PRP46	Q12417	451 aa	Predicted RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	RGS2	Q99188	309 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	FSH3	Q99369	266 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	COX2	P00410	251 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	DST1	P07273	309 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	ALG7	P07286	448 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	NUP1	P20676	1076 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	RAD57	P25301	460 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	ZIP1	P31111	875 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	DEG1	P31115	442 aa	Known RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	CBP4	P37267	147 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	MIT1	P40002	666 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YER079W	P40052	210 aa	Known RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	LCP5	P40079	357 aa	Predicted RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	RIP-Chip
TFA1	YKL028W	TRS85	P46944	698 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YJL118W	P47022	219 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	UBP8	P50102	471 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	SMM1	P53720	384 aa	Known RBP	4.12	□□□□□ -1.75
TFA1	YKL028W	RNT1	Q02555	471 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	GIP3	Q03016	1276 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	URH1	Q04179	340 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	SMC5	Q08204	1093 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YOL075C	Q08234	1294 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YPR022C	Q12139	1133 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YPR1	Q12458	312 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	UBA3	Q99344	299 aa		4.12	□□□□□ -1.75
TFA1	YKL028W	YER145C-A	A0A023PYF4	145 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	TDH2	P00358	332 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
TFA1	YKL028W	SUC2	P00724	532 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	MES1	P00958	751 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	OPI3	P05375	206 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	RPL7A	P05737	244 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	IMA3	P0CW40	589 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	IMA4	P0CW41	589 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	RPS16A	P0CX51	143 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	RPS16B	P0CX52	143 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	FRS2	P15625	503 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	AIM29	P36154	155 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	ROT2	P38138	954 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	YAL037W	P39728	267 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	SNM1	P40993	198 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	KAP114	P53067	1004 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	BUD32	P53323	261 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	YIF1	P53845	314 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	REX2	P54964	269 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	SPP2	Q02521	185 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	BNA7	Q04066	261 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	COQ11	Q05892	277 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	IKI3	Q06706	1349 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	IMA2	Q08295	589 aa		4.11	□□□□□ -1.75
TFA1	YKL028W	RPL7B	Q12213	244 aa	Known RBP	4.11	□□□□□ -1.75
TFA1	YKL028W	SSK22	P25390	1331 aa	Predicted RBP	4.1	□□□□□ -1.75
TFA1	YKL028W	RAD3	P06839	778 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	PPR1	P07272	904 aa	Predicted RBP	4.1	□□□□□ -1.75
TFA1	YKL028W	MAS2	P11914	482 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	YPK2	P18961	677 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	SLM5	P25345	492 aa	Known RBP	4.1	□□□□□ -1.75
TFA1	YKL028W	CSM1	P25651	190 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	YMC2	P38087	329 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	PPS1	P38148	807 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	MAL32	P38158	584 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	YHR182W	P38870	785 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	BTT1	P40314	149 aa	Predicted RBP	4.1	□□□□□ -1.75
TFA1	YKL028W	LYS12	P40495	371 aa	Known RBP	4.1	□□□□□ -1.75
TFA1	YKL028W	HAM1	P47119	197 aa	Known RBP	4.1	□□□□□ -1.75
TFA1	YKL028W	STB4	P50104	949 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	MAL12	P53341	584 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	DSL1	P53847	754 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	ASI1	P54074	624 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	MPS1	P54199	764 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	SLT2	Q00772	484 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	YPL068C	Q02749	293 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	FMP30	Q02883	468 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	YDR387C	Q04162	555 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	MYO5	Q04439	1219 aa	Known RBP	4.1	□□□□□ -1.75
TFA1	YKL028W	BUR2	Q05949	395 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	IRC10	Q08118	586 aa		4.1	□□□□□ -1.75
TFA1	YKL028W	RAX1	Q08760	435 aa		4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 25.2 ms