RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 BECN1Q14457 450 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 NBR1Q14596 966 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 GDF6Q6KF10 455 aaPredicted RBP22.89■■□□□ 1.25
PTCD3-220ENST00000627371 TRPV6Q9H1D0 765 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 TMEM60Q9H2L4 133 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 RNPEPQ9H4A4 650 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 PRDM5Q9NQX1 630 aaPredicted RBP22.89■■□□□ 1.25
PTCD3-220ENST00000627371 ZNF302Q9NR11 478 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 TBX21Q9UL17 535 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 ZMYND8Q9ULU4 1186 aaPredicted RBP22.89■■□□□ 1.25
PTCD3-220ENST00000627371 MTMR6Q9Y217 621 aa22.89■■□□□ 1.25
PTCD3-220ENST00000627371 IGSF9BQ9UPX0 1349 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 HOXC8P31273 242 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 SWSAP1Q6NVH7 229 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 MIER3Q7Z3K6 550 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 SH3RF1Q7Z6J0 888 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 TMEM39AQ9NV64 488 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 PRKAG2Q9UGJ0 569 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 PCDHB6Q9Y5E3 794 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 TANC1Q9C0D5 1861 aa22.88■■□□□ 1.25
PTCD3-220ENST00000627371 TRIM43BA6NCK2 446 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 H0YGN5 161 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 KIAA0355O15063 1070 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 SYN1P17600 705 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 SPIRE1Q08AE8 756 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 PDXDC2PQ6P474 469 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 FERMT3Q86UX7 667 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 SPRYD3Q8NCJ5 442 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 TRIM43Q96BQ3 446 aaPredicted RBP22.87■■□□□ 1.25
PTCD3-220ENST00000627371 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.87■■□□□ 1.25
PTCD3-220ENST00000627371 GABBR1Q9UBS5 961 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 PCDHA12Q9UN75 941 aa22.87■■□□□ 1.25
PTCD3-220ENST00000627371 MAFBQ9Y5Q3 323 aaPredicted RBP22.87■■□□□ 1.25
PTCD3-220ENST00000627371 C17orf102A2RUQ5 167 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 OR52Z1P0C646 297 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 PDIA4P13667 645 aaKnown RBP22.86■■□□□ 1.25
PTCD3-220ENST00000627371 RESTQ13127 1097 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 HIC1Q14526 733 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 PLCB4Q15147 1175 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 PTGISQ16647 500 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 CTAGE1Q96RT6 745 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 TTC12Q9H892 705 aaPredicted RBP22.86■■□□□ 1.25
PTCD3-220ENST00000627371 NOD1Q9Y239 953 aa22.86■■□□□ 1.25
PTCD3-220ENST00000627371 NRCAMQ92823 1304 aa22.85■■□□□ 1.25
PTCD3-220ENST00000627371 EML1O00423 815 aa22.85■■□□□ 1.25
PTCD3-220ENST00000627371 GNAT1P11488 350 aa22.85■■□□□ 1.25
PTCD3-220ENST00000627371 TXKP42681 527 aa22.85■■□□□ 1.25
PTCD3-220ENST00000627371 C4orf32Q8N8J7 132 aa22.85■■□□□ 1.25
PTCD3-220ENST00000627371 TNPO1Q92973 898 aaKnown RBP22.85■■□□□ 1.25
PTCD3-220ENST00000627371 TRPC6Q9Y210 931 aa22.85■■□□□ 1.25
PTCD3-220ENST00000627371 POTEB3A0JP26 581 aa22.84■■□□□ 1.25
PTCD3-220ENST00000627371 ATP4AP20648 1035 aa22.84■■□□□ 1.25
PTCD3-220ENST00000627371 PPFIA1Q13136 1202 aa22.84■■□□□ 1.25
PTCD3-220ENST00000627371 POTEBQ6S5H4 581 aa22.84■■□□□ 1.25
PTCD3-220ENST00000627371 ATP8B4Q8TF62 1192 aa22.84■■□□□ 1.25
PTCD3-220ENST00000627371 LMBR1Q8WVP7 490 aa22.84■■□□□ 1.25
PTCD3-220ENST00000627371 SETD4Q9NVD3 440 aa22.84■■□□□ 1.25
PTCD3-220ENST00000627371 EVPLQ92817 2033 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 LAD1O00515 517 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 CYP2C9P11712 490 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 ADAM17P78536 824 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 ZNF200P98182 395 aaPredicted RBP22.83■■□□□ 1.25
PTCD3-220ENST00000627371 PTGDRQ13258 359 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 EPHA7Q15375 998 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 GRIK4Q16099 956 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 UGCGQ16739 394 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 NCAPH2Q6IBW4 605 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 ATP6V0A1Q93050 837 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 HIPK3Q9H422 1215 aa22.83■■□□□ 1.25
PTCD3-220ENST00000627371 ZSCAN16Q9H4T2 348 aaPredicted RBP22.83■■□□□ 1.25
PTCD3-220ENST00000627371 ZNF862O60290 1169 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 HBP1O60381 514 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 TIMP1P01033 207 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 INSRRP14616 1297 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 RAG1P15918 1043 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 ITGB8P26012 769 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 PTK7Q13308 1070 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 PRPF38BQ5VTL8 546 aaKnown RBP22.82■■□□□ 1.24
PTCD3-220ENST00000627371 CKAP2LQ8IYA6 745 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 BBXQ8WY36 941 aaPredicted RBP22.82■■□□□ 1.24
PTCD3-220ENST00000627371 FAM167AQ96KS9 214 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 NOC4LQ9BVI4 516 aaKnown RBP22.82■■□□□ 1.24
PTCD3-220ENST00000627371 PCDH10Q9P2E7 1040 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 ARID2Q68CP9 1835 aa22.82■■□□□ 1.24
PTCD3-220ENST00000627371 COL1A2P08123 1366 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 RRN3P2A6NIE6 340 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 TREHO43280 583 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 P4HBP07237 508 aaKnown RBP22.81■■□□□ 1.24
PTCD3-220ENST00000627371 PSMC5P62195 406 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 ATP2C1P98194 919 aaPredicted RBP22.81■■□□□ 1.24
PTCD3-220ENST00000627371 PRKCEQ02156 737 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 SERINC5Q86VE9 423 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 BANK1Q8NDB2 785 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 PPP1R12CQ9BZL4 782 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 SCN5AQ14524 2016 aa22.81■■□□□ 1.24
PTCD3-220ENST00000627371 MBLAC1A4D2B0 266 aaPredicted RBP22.8■■□□□ 1.24
PTCD3-220ENST00000627371 POTEMA6NI47 508 aa22.8■■□□□ 1.24
PTCD3-220ENST00000627371 OATP04181 439 aa22.8■■□□□ 1.24
PTCD3-220ENST00000627371 PRPHP41219 470 aa22.8■■□□□ 1.24
PTCD3-220ENST00000627371 TECP42680 631 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms