RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 AGO4Q9HCK5 861 aaKnown RBP15.17■□□□□ 0.02
CPSF4-210ENST00000469897 BARHL2Q9NY43 387 aa15.17■□□□□ 0.02
CPSF4-210ENST00000469897 CDY2AQ9Y6F7 541 aa15.17■□□□□ 0.02
CPSF4-210ENST00000469897 KIAA1217Q5T5P2 1943 aa15.17■□□□□ 0.02
CPSF4-210ENST00000469897 TET1Q8NFU7 2136 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.16■□□□□ 0.02
CPSF4-210ENST00000469897 H3BNC9 293 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 MEIS1O00470 390 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 HMGB1P09429 215 aaKnown RBP15.16■□□□□ 0.02
CPSF4-210ENST00000469897 CLK2P49760 499 aaKnown RBP15.16■□□□□ 0.02
CPSF4-210ENST00000469897 APOBRQ0VD83 1088 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 ITGB3BPQ13352 177 aaPredicted RBP15.16■□□□□ 0.02
CPSF4-210ENST00000469897 GPM6BQ13491 265 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 PLCB4Q15147 1175 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 FBXO47Q5MNV8 452 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 JAKMIP3Q5VZ66 844 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 PPP1R18Q6NYC8 613 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 PLPPR4Q7Z2D5 763 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 FIBCD1Q8N539 461 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 TRAPPC12Q8WVT3 735 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 SAMD11Q96NU1 681 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 UIMC1Q96RL1 719 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 ANO3Q9BYT9 981 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 AGO3Q9H9G7 860 aaKnown RBP15.16■□□□□ 0.02
CPSF4-210ENST00000469897 TRPC6Q9Y210 931 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 NFASCO94856 1347 aa15.16■□□□□ 0.02
CPSF4-210ENST00000469897 BAZ2BQ9UIF8 2168 aaKnown RBP15.15■□□□□ 0.02
CPSF4-210ENST00000469897 ADAMTS3O15072 1205 aa15.15■□□□□ 0.02
CPSF4-210ENST00000469897 ATG7O95352 703 aa15.15■□□□□ 0.02
CPSF4-210ENST00000469897 COL9A1P20849 921 aa15.15■□□□□ 0.02
CPSF4-210ENST00000469897 TMEM62Q0P6H9 643 aa15.15■□□□□ 0.02
CPSF4-210ENST00000469897 PTPROQ16827 1216 aa15.15■□□□□ 0.02
CPSF4-210ENST00000469897 Q6ZUG5 572 aa15.15■□□□□ 0.02
CPSF4-210ENST00000469897 RTN4RL1Q86UN2 441 aaPredicted RBP15.15■□□□□ 0.02
CPSF4-210ENST00000469897 TNPO1Q92973 898 aaKnown RBP15.15■□□□□ 0.02
CPSF4-210ENST00000469897 MRPL38Q96DV4 380 aaKnown RBP15.15■□□□□ 0.02
CPSF4-210ENST00000469897 GBF1Q92538 1859 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 TANC1Q9C0D5 1861 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 hCG_1984214I3L0E3 225 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 DDX39AO00148 427 aaKnown RBP15.14■□□□□ 0.01
CPSF4-210ENST00000469897 CD52P31358 61 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 SREBF1P36956 1147 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 METAP2P50579 478 aaKnown RBP eCLIP15.14■□□□□ 0.01
CPSF4-210ENST00000469897 MRPS6P82932 125 aaKnown RBP15.14■□□□□ 0.01
CPSF4-210ENST00000469897 PFKFB3Q16875 520 aaPredicted RBP15.14■□□□□ 0.01
CPSF4-210ENST00000469897 IER5Q5VY09 327 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 ZNF713Q8N859 430 aaPredicted RBP15.14■□□□□ 0.01
CPSF4-210ENST00000469897 KCNB2Q92953 911 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 BRF1Q92994 677 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 JAKMIP1Q96N16 626 aaKnown RBP15.14■□□□□ 0.01
CPSF4-210ENST00000469897 GLT8D2Q9H1C3 349 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 UBE2ZQ9H832 354 aaPredicted RBP15.14■□□□□ 0.01
CPSF4-210ENST00000469897 PCDHA2Q9Y5H9 948 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 SNX14Q9Y5W7 946 aa15.14■□□□□ 0.01
CPSF4-210ENST00000469897 XIRP2A4UGR9 3374 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 POTEB3A0JP26 581 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 FAM86B1E9PN63 330 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 PPFIA3O75145 1194 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 CCNE2O96020 404 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 FAM86B2P0C5J1 330 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 KCNA5P22460 613 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 KLRC1P26715 233 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 BMPR1AP36894 532 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 AP3B2Q13367 1082 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 SWSAP1Q6NVH7 229 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 POTEBQ6S5H4 581 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 ABHD15Q6UXT9 468 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 TSHZ1Q6ZSZ6 1077 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 PLA2G4DQ86XP0 818 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 TEX2Q8IWB9 1127 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 BANK1Q8NDB2 785 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.13■□□□□ 0.01
CPSF4-210ENST00000469897 EPHX3Q9H6B9 360 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 RAPGEFL1Q9UHV5 662 aa15.13■□□□□ 0.01
CPSF4-210ENST00000469897 TRIP12Q14669 1992 aaPredicted RBP15.13■□□□□ 0.01
CPSF4-210ENST00000469897 IGKV6D-21A0A0A0MT36 114 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 CCDC196A0A1B0GTZ2 297 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 BACH1O14867 736 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 DHX15O43143 795 aaKnown RBP15.12■□□□□ 0.01
CPSF4-210ENST00000469897 SCG2P13521 617 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 HSPA4P34932 840 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 RCAN1P53805 252 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 PKN1Q16512 942 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 MTHFD1LQ6UB35 978 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 CELF4Q9BZC1 486 aaKnown RBP15.12■□□□□ 0.01
CPSF4-210ENST00000469897 C6orf50Q9HD87 102 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 PADI3Q9ULW8 664 aa15.12■□□□□ 0.01
CPSF4-210ENST00000469897 MYH6P13533 1939 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 SMIM35A0A1B0GVV1 85 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 M0QZ92 97 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 GRM6O15303 877 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 PRPF3O43395 683 aaKnown RBP15.11■□□□□ 0.01
CPSF4-210ENST00000469897 DGKIO75912 1065 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 RPLP2P05387 115 aaKnown RBP15.11■□□□□ 0.01
CPSF4-210ENST00000469897 CYP3A4P08684 503 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 CTNNB1P35222 781 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 BTG3Q14201 252 aaPredicted RBP15.11■□□□□ 0.01
CPSF4-210ENST00000469897 LEXMQ3ZCV2 418 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 TCEAL5Q5H9L2 206 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 BLOC1S2Q6QNY1 142 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 360.7 ms