RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ODR4Q5SWX8 454 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 PDXDC2PQ6P474 469 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 RPUSD2Q8IZ73 545 aaKnown RBP12.05□□□□□ -0.48
UBR4-208ENST00000459947 CYP2W1Q8TAV3 490 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 ZFP91Q96JP5 570 aaPredicted RBP12.05□□□□□ -0.48
UBR4-208ENST00000459947 IGSF9BQ9UPX0 1349 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 TIMP1P01033 207 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 ZNF286BP0CG31 522 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 SMIM10L2AP0DMW4 78 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 SMIM10L2BP0DMW5 78 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 HOXC8P31273 242 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 RPAINQ86UA6 219 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 PRDM5Q9NQX1 630 aaPredicted RBP12.05□□□□□ -0.48
UBR4-208ENST00000459947 CDC42EP1Q00587 391 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 SP4Q02446 784 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 PTGISQ16647 500 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 TMEM63BQ5T3F8 832 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 TRPC6Q9Y210 931 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 MORC2Q9Y6X9 1032 aaPredicted RBP12.04□□□□□ -0.48
UBR4-208ENST00000459947 PSMC6P62333 389 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 HAUS3Q68CZ6 603 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 MAFBQ9Y5Q3 323 aaPredicted RBP12.04□□□□□ -0.48
UBR4-208ENST00000459947 P4HBP07237 508 aaKnown RBP12.04□□□□□ -0.48
UBR4-208ENST00000459947 PSMC5P62195 406 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 FAAP100Q0VG06 881 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 ATL3Q6DD88 541 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 PSRC1Q6PGN9 363 aaPredicted RBP12.04□□□□□ -0.48
UBR4-208ENST00000459947 B3GNT9Q6UX72 402 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 HDAC6Q9UBN7 1215 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 PCDHA12Q9UN75 941 aa12.04□□□□□ -0.48
UBR4-208ENST00000459947 EFCAB14O75071 495 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 XKR3Q5GH77 459 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 ARL6IP4Q66PJ3 421 aaKnown RBP12.03□□□□□ -0.48
UBR4-208ENST00000459947 MFSD5Q6N075 450 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 NME8Q8N427 588 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 HIPK3Q9H422 1215 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 GRIN2DO15399 1336 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 POTEB3A0JP26 581 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 VPS37CA5D8V6 355 aaPredicted RBP12.03□□□□□ -0.48
UBR4-208ENST00000459947 DDX39AO00148 427 aaKnown RBP12.03□□□□□ -0.48
UBR4-208ENST00000459947 GAS2O43903 313 aaKnown RBP12.03□□□□□ -0.48
UBR4-208ENST00000459947 ACTN1P12814 892 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 FPGSQ05932 587 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 POTEBQ6S5H4 581 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 OTUD6AQ7L8S5 288 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 CKAP2LQ8IYA6 745 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 ZNF396Q96N95 335 aaPredicted RBP12.03□□□□□ -0.48
UBR4-208ENST00000459947 NOC4LQ9BVI4 516 aaKnown RBP12.03□□□□□ -0.48
UBR4-208ENST00000459947 UNC45AQ9H3U1 944 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 GJB4Q9NTQ9 266 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 CCNE2O96020 404 aa12.03□□□□□ -0.48
UBR4-208ENST00000459947 XRCC6P12956 609 aaKnown RBP eCLIP12.03□□□□□ -0.48
UBR4-208ENST00000459947 M0QZ92 97 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 SLC37A4O43826 429 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 B4GALT4O60513 344 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 LYPLA2O95372 231 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 PLCB4Q15147 1175 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 GRIK4Q16099 956 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 TUFT1Q9NNX1 390 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 RNF216Q9NWF9 866 aaPredicted RBP12.02□□□□□ -0.48
UBR4-208ENST00000459947 SQORQ9Y6N5 450 aa12.02□□□□□ -0.48
UBR4-208ENST00000459947 H0YGN5 161 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 ADAMTS3O15072 1205 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 STX6O43752 255 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 OATP04181 439 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 SELPP16109 830 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 QARSP47897 775 aaKnown RBP12.02□□□□□ -0.49
UBR4-208ENST00000459947 FXR2P51116 673 aaKnown RBP eCLIP12.02□□□□□ -0.496e-10■■■□□ 15.2
UBR4-208ENST00000459947 SWSAP1Q6NVH7 229 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 SERINC5Q86VE9 423 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 POTEDQ86YR6 584 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 MTMR9Q96QG7 549 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 ZSWIM4Q9H7M6 989 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 GABBR1Q9UBS5 961 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 VAV3Q9UKW4 847 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 TMOD1P28289 359 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 MCM7P33993 719 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 PDIA5Q14554 519 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.02□□□□□ -0.49
UBR4-208ENST00000459947 ATP6V1DQ9Y5K8 247 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 LTBP2Q14767 1821 aa12.02□□□□□ -0.49
UBR4-208ENST00000459947 MBLAC1A4D2B0 266 aaPredicted RBP12.01□□□□□ -0.49
UBR4-208ENST00000459947 EDIL3O43854 480 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 IRX5P78411 483 aaPredicted RBP12.01□□□□□ -0.49
UBR4-208ENST00000459947 C4orf19Q8IY42 314 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 CCDC43Q96MW1 224 aaKnown RBP12.01□□□□□ -0.49
UBR4-208ENST00000459947 ZMYND8Q9ULU4 1186 aaPredicted RBP12.01□□□□□ -0.49
UBR4-208ENST00000459947 PCDHA2Q9Y5H9 948 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 DOCK5Q9H7D0 1870 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 MYH9P35579 1960 aaKnown RBP12.01□□□□□ -0.49
UBR4-208ENST00000459947 SMIM35A0A1B0GVV1 85 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 SORBS3O60504 671 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 SYT1P21579 422 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 AK8Q96MA6 479 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 POLR3CQ9BUI4 534 aaPredicted RBP12.01□□□□□ -0.49
UBR4-208ENST00000459947 ANKEF1Q9NU02 776 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 TUBE1Q9UJT0 475 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 KAT6AQ92794 2004 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 RFC5P40937 340 aa12.01□□□□□ -0.49
UBR4-208ENST00000459947 NCAPH2Q6IBW4 605 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms