RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CSGALNACT2Q8N6G5 542 aa15.32■□□□□ 0.04
PTPRF-202ENST00000372405 CTAGE1Q96RT6 745 aa15.32■□□□□ 0.04
PTPRF-202ENST00000372405 TAB2Q9NYJ8 693 aa15.32■□□□□ 0.04
PTPRF-202ENST00000372405 KCNA2P16389 499 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 CASP5P51878 434 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 COPB1P53618 953 aaKnown RBP15.31■□□□□ 0.04
PTPRF-202ENST00000372405 SPAG1Q07617 926 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 SNAPC2Q13487 334 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 NCAPG2Q86XI2 1143 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 NEK9Q8TD19 979 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 NACC1Q96RE7 527 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 FBXO40Q9UH90 709 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 TELO2Q9Y4R8 837 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 MYH11P35749 1972 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 PFASO15067 1338 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 P4HBP07237 508 aaKnown RBP15.31■□□□□ 0.04
PTPRF-202ENST00000372405 ERCC3P19447 782 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 GOLGA8FQ08AF8 430 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 GOLGA8DPQ0D2H9 430 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 UGCGQ16739 394 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 ZCWPW2Q504Y3 356 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 SPECC1LQ69YQ0 1117 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 SFR1Q86XK3 245 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 MYOCDQ8IZQ8 938 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 DNERQ8NFT8 737 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 SCFD1Q8WVM8 642 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 MS4A4AQ96JQ5 239 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 VPS16Q9H269 839 aa15.31■□□□□ 0.04
PTPRF-202ENST00000372405 SOWAHBA6NEL2 793 aa15.3■□□□□ 0.04
PTPRF-202ENST00000372405 UNCXA6NJT0 531 aa15.3■□□□□ 0.04
PTPRF-202ENST00000372405 NLRX1Q86UT6 975 aa15.3■□□□□ 0.04
PTPRF-202ENST00000372405 ZHX3Q9H4I2 956 aa15.3■□□□□ 0.04
PTPRF-202ENST00000372405 ZNFX1Q9P2E3 1918 aaKnown RBP15.3■□□□□ 0.04
PTPRF-202ENST00000372405 MAFGO15525 162 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 EEF1GP26641 437 aaKnown RBP15.29■□□□□ 0.04
PTPRF-202ENST00000372405 ALDH5A1P51649 535 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-202ENST00000372405 LRRC55Q6ZSA7 311 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 EPM2AIP1Q7L775 607 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-202ENST00000372405 CREBRFQ8IUR6 639 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 FAM133AQ8N9E0 248 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 CCDC150Q8NCX0 1101 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 NOC3LQ8WTT2 800 aaKnown RBP15.29■□□□□ 0.04
PTPRF-202ENST00000372405 IWS1Q96ST2 819 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 ZSWIM4Q9H7M6 989 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 GBA2Q9HCG7 927 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-202ENST00000372405 SAMM50Q9Y512 469 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 SPATA31C2B4DYI2 1134 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 N4BP3O15049 544 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 STAM2O75886 525 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 CYP2C8P10632 490 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 SKILP12757 684 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 OSBPP22059 807 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 HOXD13P35453 343 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 QARSP47897 775 aaKnown RBP15.29■□□□□ 0.04
PTPRF-202ENST00000372405 KRT76Q01546 638 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 SP2Q02086 613 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 LRRC63Q05C16 580 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 CEP135Q66GS9 1140 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.29■□□□□ 0.04
PTPRF-202ENST00000372405 FGD4Q96M96 766 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 KCTD10Q9H3F6 313 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 NMRK2Q9NPI5 230 aa15.29■□□□□ 0.04
PTPRF-202ENST00000372405 TMEM150BA6NC51 233 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 SFI1A8K8P3 1242 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 WDR64B1ANS9 1081 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 LYPLA2O95372 231 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 SFPQP23246 707 aaKnown RBP eCLIP15.28■□□□□ 0.043e-6■■□□□ 13
PTPRF-202ENST00000372405 EDNRBP24530 442 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 MKRN3Q13064 507 aaKnown RBP15.28■□□□□ 0.04
PTPRF-202ENST00000372405 NOLC1Q14978 699 aaKnown RBP eCLIP15.28■□□□□ 0.044e-9■■□□□ 13.3
PTPRF-202ENST00000372405 FILIP1LQ4L180 1135 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 ZNF746Q6NUN9 644 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-202ENST00000372405 FOXR2Q6PJQ5 311 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 NELFCDQ8IXH7 590 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 CNOT6LQ96LI5 555 aaKnown RBP15.28■□□□□ 0.04
PTPRF-202ENST00000372405 SENP7Q9BQF6 1050 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 SPTLC3Q9NUV7 552 aa15.28■□□□□ 0.04
PTPRF-202ENST00000372405 MCM3APO60318 1980 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 POTEB2H3BUK9 544 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 CELF2O95319 508 aaKnown RBP15.27■□□□□ 0.04
PTPRF-202ENST00000372405 SLC25A27O95847 323 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 MYBP10242 640 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 JAK3P52333 1124 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 FKBP1BP68106 108 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 STXBP2Q15833 593 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 ZNF507Q8TCN5 953 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 FIZ1Q96SL8 496 aa15.27■□□□□ 0.04
PTPRF-202ENST00000372405 NFASCO94856 1347 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 LGALS16A8MUM7 142 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 TBCAO75347 108 aaKnown RBP15.27■□□□□ 0.03
PTPRF-202ENST00000372405 EIF3JO75822 258 aaKnown RBP15.27■□□□□ 0.03
PTPRF-202ENST00000372405 PGK2P07205 417 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 SFNP31947 248 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 RARRES1P49788 294 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 ZNF131P52739 623 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 MAPK7Q13164 816 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 MIIPQ5JXC2 388 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 DAW1Q8N136 415 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 TC2NQ8N9U0 490 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 ANKRD20A12PQ8NF67 263 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms