RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 GRIN1Q05586 938 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 NFATC3Q12968 1075 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 TNNI3KQ59H18 835 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 EGFLAMQ63HQ2 1017 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 ARHGEF18Q6ZSZ5 1173 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 CIR1Q86X95 450 aaPredicted RBP5.9□□□□□ -1.46
VPS29-202ENST00000447578 PROSER1Q86XN7 944 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 NUDT10Q8NFP7 164 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 DNERQ8NFT8 737 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 CLEC4DQ8WXI8 215 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 NUDT11Q96G61 164 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 WWC2-AS2Q96NR7 200 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 TMEM209Q96SK2 561 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 TRIM55Q9BYV6 548 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 SMOC1Q9H4F8 434 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 ASH2LQ9UBL3 628 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 PRKAG3Q9UGI9 489 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 NPFFR2Q9Y5X5 522 aa5.9□□□□□ -1.46
VPS29-202ENST00000447578 U2SURPO15042 1029 aaKnown RBP5.89□□□□□ -1.47
VPS29-202ENST00000447578 CYP7B1O75881 506 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 GJB6O95452 261 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 COL6A1P12109 1028 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 TACR2P21452 398 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 PPP2R2AP63151 447 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 FXNQ16595 210 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 ANKS3Q6ZW76 656 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 ZFPM1Q8IX07 1006 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 KLHL36Q8N4N3 616 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 PIP4K2CQ8TBX8 421 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 DEF6Q9H4E7 631 aa5.89□□□□□ -1.47
VPS29-202ENST00000447578 R3HCC1Q9Y3T6 440 aaKnown RBP5.89□□□□□ -1.47
VPS29-202ENST00000447578 AMHP03971 560 aa5.88□□□□□ -1.47
VPS29-202ENST00000447578 SLPIP03973 132 aa5.88□□□□□ -1.47
VPS29-202ENST00000447578 SLC10A6Q3KNW5 377 aa5.88□□□□□ -1.47
VPS29-202ENST00000447578 MKL1Q969V6 931 aa5.88□□□□□ -1.47
VPS29-202ENST00000447578 IER2Q9BTL4 223 aa5.88□□□□□ -1.47
VPS29-202ENST00000447578 BARX1Q9HBU1 254 aaPredicted RBP5.88□□□□□ -1.47
VPS29-202ENST00000447578 SLC6A20Q9NP91 592 aa5.88□□□□□ -1.47
VPS29-202ENST00000447578 SIRPGQ9P1W8 387 aa5.88□□□□□ -1.47
VPS29-202ENST00000447578 A0A1W2PQU0 124 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 KRIT1O00522 736 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 DLX3O60479 287 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 LTFP02788 710 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 CKMP06732 381 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 COL6A2P12110 1019 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 GDF5P43026 501 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 SLFN13Q68D06 897 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 CRIP3Q6Q6R5 217 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 USP53Q70EK8 1073 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 JAZF1Q86VZ6 243 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 PHOSPHO1Q8TCT1 267 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 SRPK1Q96SB4 655 aaKnown RBP5.87□□□□□ -1.47
VPS29-202ENST00000447578 ZNF747Q9BV97 191 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 MRIQ9BWK5 157 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 MEGF9Q9H1U4 602 aa5.87□□□□□ -1.47
VPS29-202ENST00000447578 MRPL42Q9Y6G3 142 aaKnown RBP5.87□□□□□ -1.47
VPS29-202ENST00000447578 PATE3B3GLJ2 98 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 KLF4O43474 513 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 MAFKO60675 156 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 KLHL18O94889 574 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 HSD3B2P26439 372 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 GLRBP48167 497 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 MAP4K2Q12851 820 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 SERINC3Q13530 473 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 RAB33AQ14088 237 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 EEPD1Q7L9B9 569 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 DTX3Q8N9I9 347 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 KCTD13Q8WZ19 329 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 GNRHR2Q96P88 292 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 WRNIP1Q96S55 665 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 PHF20Q9BVI0 1012 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 VPS11Q9H270 941 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 ST7Q9NRC1 585 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 GPR27Q9NS67 375 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 HSPBP1Q9NZL4 362 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 ADAM29Q9UKF5 820 aa5.86□□□□□ -1.47
VPS29-202ENST00000447578 ZNF623O75123 536 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 ACVRL1P37023 503 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 R3HDM1Q15032 1099 aaKnown RBP5.85□□□□□ -1.47
VPS29-202ENST00000447578 SPDYAQ5MJ70 313 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 VASNQ6EMK4 673 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 KCNT2Q6UVM3 1135 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 GPR155Q7Z3F1 870 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 TRIM48Q8IWZ4 208 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 CELF2-AS1Q8N7Q2 184 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 Q8TCH9 128 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 CDK5RAP1Q96SZ6 601 aaKnown RBP5.85□□□□□ -1.47
VPS29-202ENST00000447578 KCNJ15Q99712 375 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 DLL4Q9NR61 685 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 TELO2Q9Y4R8 837 aa5.85□□□□□ -1.47
VPS29-202ENST00000447578 NKRFO15226 690 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS29-202ENST00000447578 CNOT4O95628 575 aaKnown RBP5.84□□□□□ -1.47
VPS29-202ENST00000447578 TUSC3Q13454 348 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 SMAD2Q15796 467 aaKnown RBP5.84□□□□□ -1.47
VPS29-202ENST00000447578 SKIDA1Q1XH10 827 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 CRB2Q5IJ48 1285 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 CYP4F22Q6NT55 531 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 Q6ZUG5 572 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 OTOP3Q7RTS5 596 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 STPG3Q8N7X2 389 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms