RNA–Protein interactions for RNA: YLR430W

SEN1, Transcript of Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p), yeast

Gene SEN1, Length 6,696 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEN1	YLR430W	MATALPHA1	P0CY06	175 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	HMLALPHA1	P0CY07	175 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	PHO80	P20052	293 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
SEN1	YLR430W	DBR1	P24309	405 aa	Known RBP	4.07	□□□□□ -1.76
SEN1	YLR430W	SER1	P33330	395 aa	Known RBP	4.07	□□□□□ -1.76
SEN1	YLR430W	OAR1	P35731	278 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	MRPL36	P36531	177 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	ARG2	P40360	574 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	VPS62	P53285	467 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	NIS1	P53939	407 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	YMR209C	Q03648	457 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	ESA1	Q08649	445 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	GRE2	Q12068	342 aa	Known RBP	4.07	□□□□□ -1.76
SEN1	YLR430W	REC8	Q12188	680 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	YPL066W	Q12194	479 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	YLR126C	Q12288	251 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	CET1	O13297	549 aa	Predicted RBP	4.07	□□□□□ -1.76
SEN1	YLR430W	RAD52	P06778	471 aa	Known RBP	4.07	□□□□□ -1.76
SEN1	YLR430W	HIS5	P07172	385 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
SEN1	YLR430W	ATP11	P32453	318 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	IST2	P38250	946 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	AVT2	P39981	480 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	GTT3	P39996	337 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	TOK1	P40310	691 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	FOL2	P51601	243 aa	Known RBP	4.07	□□□□□ -1.76
SEN1	YLR430W	CAC2	Q04199	468 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	YLR173W	Q06247	608 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	RAD34	Q06665	692 aa		4.07	□□□□□ -1.76
SEN1	YLR430W	CIT2	P08679	460 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	EST1	P17214	699 aa	Predicted RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	PRP2	P20095	876 aa	Predicted RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	DEG1	P31115	442 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	MRP4	P32902	394 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	CTF13	P35203	478 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	SLI15	P38283	698 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	POP2	P39008	433 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YIL024C	P40543	189 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	JHD2	P47156	728 aa	Predicted RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	NUP42	P49686	430 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	PEX13	P80667	386 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	PML1	Q07930	204 aa	Predicted RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	PNO1	Q99216	274 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	MEX67	Q99257	599 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	YMR084W	A2P2R3	262 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	SSA3	P09435	649 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	CDC12	P32468	407 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	SNU114	P36048	1008 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	MSC7	P38694	644 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YAR028W	P39548	234 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	MMF1	P40185	145 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	NTA1	P40354	457 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YGL039W	P53183	348 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	BRE5	P53741	515 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	LSM7	P53905	115 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	PHO92	Q06390	306 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	RRP40	Q08285	240 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	YDR018C	Q12185	396 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	HTB1	P02293	131 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	HTB2	P02294	131 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	RPC40	P07703	335 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	ERR1	P0CX10	437 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	ERR2	P0CX11	437 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	VAC17	P25591	423 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	BUB2	P26448	306 aa	Predicted RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	ARO7	P32178	256 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	GUT1	P32190	709 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	TAT1	P38085	619 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	GEP4	P38812	185 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	ERR3	P42222	437 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YGR042W	P53227	271 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	SLF1	Q12034	447 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	PST2	Q12335	198 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	FLP1	P03870	423 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YKR075C	P36155	307 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	ERV46	P39727	415 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	GND2	P53319	492 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	HDA1	P53973	706 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	PFK27	Q12471	397 aa	Predicted RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	USO1	P25386	1790 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	ATP1	P07251	545 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	CTS1	P29029	562 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	PGM1	P33401	570 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	CBR1	P38626	284 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	PRS3	P38689	320 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	PTK2	P47116	818 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	YGR017W	P53210	297 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YNR065C	P53751	1116 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YDR131C	Q03899	556 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	NMD4	Q12129	218 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YEL076C-A	P0CX16	216 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	YLR464W	P0CX17	216 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	MTF1	P14908	341 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	IDP1	P21954	428 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	DCC1	P25559	380 aa		4.06	□□□□□ -1.76
SEN1	YLR430W	RIM1	P32445	135 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	SPS19	P32573	292 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	YNK1	P36010	153 aa	Known RBP	4.06	□□□□□ -1.76
SEN1	YLR430W	RRN10	P38204	145 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms