RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	ATP10	P18496	279 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	SAC1	P32368	623 aa	Known RBP	2.28	□□□□□ -2.04
SNU114	YKL173W	ATP11	P32453	318 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	KRE6	P32486	720 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	MSN2	P33748	704 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	SRB2	P34162	210 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	YKT6	P36015	200 aa	Known RBP	2.28	□□□□□ -2.04
SNU114	YKL173W	ICS2	P38284	255 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	MSG5	P38590	489 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	STP2	P38704	541 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	STN1	P38960	494 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	CIN4	P39110	191 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	URB2	P47108	1174 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	YNL247W	P53852	767 aa	Known RBP	2.28	□□□□□ -2.04
SNU114	YKL173W	RPL15B	P54780	204 aa	Predicted RBP	2.28	□□□□□ -2.04
SNU114	YKL173W	RPN9	Q04062	393 aa	Known RBP	2.28	□□□□□ -2.04
SNU114	YKL173W	YMR130W	Q04223	302 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	GGA1	Q06336	557 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	DIS3	Q08162	1001 aa	Known RBP	2.28	□□□□□ -2.04
SNU114	YKL173W	APL4	Q12028	832 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	AEP3	Q12089	606 aa		2.28	□□□□□ -2.04
SNU114	YKL173W	CAR1	P00812	333 aa	Known RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	ADE4	P04046	510 aa	Known RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	ALG1	P16661	449 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	RPB4	P20433	221 aa	Predicted RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	SAG1	P20840	650 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	YCR006C	P25350	157 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	PTK1	P36002	662 aa	Predicted RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	YHR177W	P38867	453 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	YJL070C	P40361	888 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	UTP18	P40362	594 aa	Predicted RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	PTR3	P43606	678 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	ALK1	P43633	760 aa	Known RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	YJR154W	P47181	346 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	EMI2	Q04409	500 aa	Known RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	SMA2	Q04658	369 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	CUR1	Q06469	252 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	DIB1	Q06819	143 aa	Predicted RBP	2.28	□□□□□ -2.05
SNU114	YKL173W	THI3	Q07471	609 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	RKM5	Q12367	367 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	MTR10	Q99189	972 aa		2.28	□□□□□ -2.05
SNU114	YKL173W	YMR085W	P0CF18	432 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	YCP4	P25349	247 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	YKL023W	P36103	277 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	SMC2	P38989	1170 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	YTA12	P40341	825 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	CFD1	P40558	293 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	PSA1	P41940	361 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	GCN20	P43535	752 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	AQR1	P53943	586 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	PFA5	Q03289	374 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	ECM18	Q04623	453 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	KAP95	Q06142	861 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	DCS1	Q06151	350 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	ECM30	Q06673	1274 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	GSH2	Q08220	491 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	APC2	Q12440	853 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	NUP159	P40477	1460 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	SCEI	P03882	235 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	GAL4	P04386	881 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	RPL6B	P05739	176 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	LEU4	P06208	619 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	SNF3	P10870	884 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	KRE2	P27809	442 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	BEM1	P29366	551 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	NTG1	P31378	399 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	OCT1	P35999	772 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	DBP8	P38719	431 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	RRP4	P38792	359 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	LIN1	P38852	340 aa	Predicted RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	YIL089W	P40500	205 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	YIP5	P53108	310 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	MPS2	P53159	387 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	EFM5	P53200	248 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	COP1	P53622	1201 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	YNL050C	P53952	270 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	RPL6A	Q02326	176 aa	Known RBP	2.27	□□□□□ -2.05
SNU114	YKL173W	STD1	Q02794	444 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	RGT2	Q12300	763 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	GLE1	Q12315	538 aa		2.27	□□□□□ -2.05
SNU114	YKL173W	RHB1	P25378	209 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	RDS1	P25611	832 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	RAD14	P28519	371 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	2.26	□□□□□ -2.05	not detected
SNU114	YKL173W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	2.26	□□□□□ -2.05	not detected
SNU114	YKL173W	ARA1	P38115	344 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	WSS1	P38838	269 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	SNO3	P43544	222 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	GAT1	P43574	510 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	ROG1	P53118	685 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	ADA2	Q02336	434 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	PNG1	Q02890	363 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	RRT8	Q08219	342 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	THP1	Q08231	455 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	POL1	P13382	1468 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	YPR089W	O13585	888 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	SPS4	P09937	338 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	SOR1	P35497	357 aa	Known RBP	2.26	□□□□□ -2.05
SNU114	YKL173W	MRPL40	P36534	297 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	DUG2	P38149	878 aa		2.26	□□□□□ -2.05

Retrieved 100 of 5,963 RNA–protein pairs in 50.2 ms