RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 STARD7Q9NQZ5 370 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 SORBS3O60504 671 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 KPNA6O60684 536 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 PURAQ00577 322 aaKnown RBP23.07■■□□□ 1.28
PTCD3-220ENST00000627371 HSDL1Q3SXM5 330 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 PRR16Q569H4 304 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 NEK8Q86SG6 692 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 LENG9Q96B70 501 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 INTS4Q96HW7 963 aaKnown RBP23.07■■□□□ 1.28
PTCD3-220ENST00000627371 PKD2L1Q9P0L9 805 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 NFASCO94856 1347 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 ELP1O95163 1332 aa23.07■■□□□ 1.28
PTCD3-220ENST00000627371 CYP3A7-CYP3A51PA0A087WV96 503 aa23.06■■□□□ 1.28
PTCD3-220ENST00000627371 MYL3P08590 195 aa23.06■■□□□ 1.28
PTCD3-220ENST00000627371 HOXD8P13378 290 aaPredicted RBP23.06■■□□□ 1.28
PTCD3-220ENST00000627371 CYP3A7P24462 503 aa23.06■■□□□ 1.28
PTCD3-220ENST00000627371 SNX17Q15036 470 aa23.06■■□□□ 1.28
PTCD3-220ENST00000627371 DGKDQ16760 1214 aa23.06■■□□□ 1.28
PTCD3-220ENST00000627371 SLC39A5Q6ZMH5 540 aa23.06■■□□□ 1.28
PTCD3-220ENST00000627371 FOXP1Q9H334 677 aaPredicted RBP23.06■■□□□ 1.28
PTCD3-220ENST00000627371 WDR81Q562E7 1941 aa23.06■■□□□ 1.28
PTCD3-220ENST00000627371 FAM205CA6NFA0 338 aa23.05■■□□□ 1.28
PTCD3-220ENST00000627371 TDP2O95551 362 aa23.05■■□□□ 1.28
PTCD3-220ENST00000627371 ATN1P54259 1190 aaPredicted RBP23.05■■□□□ 1.28
PTCD3-220ENST00000627371 LRRC26Q2I0M4 334 aa23.05■■□□□ 1.28
PTCD3-220ENST00000627371 Q4G0T1 1027 aa23.05■■□□□ 1.28
PTCD3-220ENST00000627371 C1orf53Q5VUE5 145 aa23.05■■□□□ 1.28
PTCD3-220ENST00000627371 MBOAT7Q96N66 472 aa23.05■■□□□ 1.28
PTCD3-220ENST00000627371 MTG1Q9BT17 334 aaPredicted RBP23.05■■□□□ 1.28
PTCD3-220ENST00000627371 NOP56O00567 594 aaKnown RBP23.04■■□□□ 1.28
PTCD3-220ENST00000627371 PPFIA4O75335 1185 aa23.04■■□□□ 1.28
PTCD3-220ENST00000627371 ITGB3BPQ13352 177 aaPredicted RBP23.04■■□□□ 1.28
PTCD3-220ENST00000627371 LETM2Q2VYF4 491 aa23.04■■□□□ 1.28
PTCD3-220ENST00000627371 GPR20Q99678 358 aa23.04■■□□□ 1.28
PTCD3-220ENST00000627371 SDF4Q9BRK5 362 aa23.04■■□□□ 1.28
PTCD3-220ENST00000627371 ZNF577Q9BSK1 485 aa23.04■■□□□ 1.28
PTCD3-220ENST00000627371 JPH1Q9HDC5 661 aaPredicted RBP23.04■■□□□ 1.28
PTCD3-220ENST00000627371 A0A0U1RQG5 324 aaPredicted RBP23.03■■□□□ 1.28
PTCD3-220ENST00000627371 IPO5O00410 1097 aaKnown RBP23.03■■□□□ 1.28
PTCD3-220ENST00000627371 GCFC2P16383 781 aaKnown RBP23.03■■□□□ 1.28
PTCD3-220ENST00000627371 PPP4R3AQ6IN85 833 aa23.03■■□□□ 1.28
PTCD3-220ENST00000627371 VTI1AQ96AJ9 217 aa23.03■■□□□ 1.28
PTCD3-220ENST00000627371 NAP1L4Q99733 375 aaKnown RBP23.03■■□□□ 1.28
PTCD3-220ENST00000627371 MSH4O15457 936 aa23.02■■□□□ 1.28
PTCD3-220ENST00000627371 SP4Q02446 784 aa23.02■■□□□ 1.28
PTCD3-220ENST00000627371 GNL2Q13823 731 aaKnown RBP23.02■■□□□ 1.28
PTCD3-220ENST00000627371 SLC9A2Q9UBY0 812 aa23.02■■□□□ 1.28
PTCD3-220ENST00000627371 DDX25Q9UHL0 483 aaKnown RBP23.02■■□□□ 1.28
PTCD3-220ENST00000627371 TELO2Q9Y4R8 837 aa23.02■■□□□ 1.28
PTCD3-220ENST00000627371 MYH9P35579 1960 aaKnown RBP23.01■■□□□ 1.27
PTCD3-220ENST00000627371 KIF28PB7ZC32 967 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 H3BQV1 296 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 DHX15O43143 795 aaKnown RBP23.01■■□□□ 1.27
PTCD3-220ENST00000627371 CCNT1O60563 726 aaKnown RBP23.01■■□□□ 1.27
PTCD3-220ENST00000627371 F2P00734 622 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 ZNF286BP0CG31 522 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 U2AF2P26368 475 aaKnown RBP eCLIP23.01■■□□□ 1.27
PTCD3-220ENST00000627371 RTP1P59025 263 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 ITGA7Q13683 1181 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 LARP1BQ659C4 914 aaKnown RBP23.01■■□□□ 1.27
PTCD3-220ENST00000627371 NOSTRINQ8IVI9 506 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 DPF3Q92784 378 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 SEZ6LQ9BYH1 1024 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 TBC1D22BQ9NU19 505 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 GRIN2DO15399 1336 aa23.01■■□□□ 1.27
PTCD3-220ENST00000627371 ARVCFO00192 962 aa23■■□□□ 1.27
PTCD3-220ENST00000627371 SLC37A4O43826 429 aa23■■□□□ 1.27
PTCD3-220ENST00000627371 PSMC6P62333 389 aa23■■□□□ 1.27
PTCD3-220ENST00000627371 TRIM60Q495X7 471 aa23■■□□□ 1.27
PTCD3-220ENST00000627371 SLC43A3Q8NBI5 491 aa23■■□□□ 1.27
PTCD3-220ENST00000627371 KAT2BQ92831 832 aa23■■□□□ 1.27
PTCD3-220ENST00000627371 KATNAL1Q9BW62 490 aa23■■□□□ 1.27
PTCD3-220ENST00000627371 KAT6AQ92794 2004 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 GSTTP1A0A1W2PQM5 241 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 EVI5O60447 810 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 LGALS2P05162 132 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 PDCP20941 246 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 CDK7P50613 346 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 ETNPPLQ8TBG4 499 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 SEPT1Q8WYJ6 367 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 SLC5A5Q92911 643 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 UIMC1Q96RL1 719 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 C16orf70Q9BSU1 422 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 ATP11BQ9Y2G3 1177 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 MROH7Q68CQ1 1323 aa22.99■■□□□ 1.27
PTCD3-220ENST00000627371 DDX39AO00148 427 aaKnown RBP22.98■■□□□ 1.27
PTCD3-220ENST00000627371 TCF7P36402 384 aaPredicted RBP22.98■■□□□ 1.27
PTCD3-220ENST00000627371 ACTR2P61160 394 aa22.98■■□□□ 1.27
PTCD3-220ENST00000627371 ANKRD33Q7Z3H0 272 aa22.98■■□□□ 1.27
PTCD3-220ENST00000627371 RIT2Q99578 217 aa22.98■■□□□ 1.27
PTCD3-220ENST00000627371 FOXD4L1Q9NU39 408 aa22.98■■□□□ 1.27
PTCD3-220ENST00000627371 HAS3O00219 553 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 WNT7AO00755 349 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 CCNE2O96020 404 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 PSEN2P49810 448 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 KRT76Q01546 638 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 NBPF20Q3BBV1 942 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 LRCH2Q5VUJ6 765 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 MCTP1Q6DN14 999 aa22.97■■□□□ 1.27
PTCD3-220ENST00000627371 ZNF746Q6NUN9 644 aaPredicted RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms