RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SMCR8Q8TEV9 937 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-222ENST00000555774 AENQ8WTP8 325 aaKnown RBP14.9□□□□□ -0.02
SHMT2-222ENST00000555774 MKL1Q969V6 931 aa14.9□□□□□ -0.02
SHMT2-222ENST00000555774 SELENOOQ9BVL4 669 aa14.9□□□□□ -0.02
SHMT2-222ENST00000555774 TULP2O00295 520 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 RNF40O75150 1001 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 CAPN2P17655 700 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 PAFAH1B1P43034 410 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 GLE1Q53GS7 698 aaKnown RBP14.89□□□□□ -0.03
SHMT2-222ENST00000555774 FAM83BQ5T0W9 1011 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 CDC42EP5Q6NZY7 148 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 CLEC10AQ8IUN9 316 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 GLIS3Q8NEA6 775 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 TEKT1Q969V4 418 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 GJD4Q96KN9 370 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-222ENST00000555774 ZC3H12CQ9C0D7 883 aaKnown RBP14.89□□□□□ -0.03
SHMT2-222ENST00000555774 TBX3O15119 743 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 ONECUT3O60422 494 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-222ENST00000555774 PRPF6O94906 941 aaKnown RBP14.89□□□□□ -0.03
SHMT2-222ENST00000555774 CCDC181Q5TID7 509 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 GPBP1Q86WP2 473 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 AFAP1L1Q8TED9 768 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 LSM14BQ9BX40 385 aaKnown RBP14.89□□□□□ -0.03
SHMT2-222ENST00000555774 ANO3Q9BYT9 981 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 TSPYL1Q9H0U9 437 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 NYAP2Q9P242 653 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 KIAA1024Q9UPX6 916 aa14.89□□□□□ -0.03
SHMT2-222ENST00000555774 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.89□□□□□ -0.03
SHMT2-222ENST00000555774 MPHOSPH10O00566 681 aaKnown RBP14.88□□□□□ -0.03
SHMT2-222ENST00000555774 RIMBP2O15034 1052 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 NOL4O94818 638 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 CYP11B2P19099 503 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 SLC16A2P36021 539 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 GFPT1Q06210 699 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-222ENST00000555774 TDRD12Q587J7 1177 aaKnown RBP14.88□□□□□ -0.03
SHMT2-222ENST00000555774 DHX36Q9H2U1 1008 aaKnown RBP14.88□□□□□ -0.03
SHMT2-222ENST00000555774 KCTD10Q9H3F6 313 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 FAM204AQ9H8W3 233 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 E9PMD0 336 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 F8W031 263 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-222ENST00000555774 CLSTN1O94985 981 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 SSBP05455 408 aaKnown RBP eCLIP14.88□□□□□ -0.03
SHMT2-222ENST00000555774 QRICH1Q2TAL8 776 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 KCTD1Q719H9 257 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 ERMNQ8TAM6 284 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 EMILIN3Q9NT22 766 aa14.88□□□□□ -0.03
SHMT2-222ENST00000555774 CETN3O15182 167 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 SLC1A4P43007 532 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 SLC12A3P55017 1021 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 HERC4Q5GLZ8 1057 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-222ENST00000555774 APOBEC3HQ6NTF7 200 aaKnown RBP14.87□□□□□ -0.03
SHMT2-222ENST00000555774 KCTD17Q8N5Z5 321 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 SCFD1Q8WVM8 642 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 MRIQ9BWK5 157 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 AIPL1Q9NZN9 384 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 POTEB3A0JP26 581 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 POTECB2RU33 542 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 EPHB4P54760 987 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 ATP2B2Q01814 1243 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 RASSF7Q02833 373 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 SF3B2Q13435 895 aaKnown RBP14.87□□□□□ -0.03
SHMT2-222ENST00000555774 NAB2Q15742 525 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 CDC37Q16543 378 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-222ENST00000555774 SLC18A3Q16572 532 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 Q4G0T1 1027 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 CFAP221Q4G0U5 840 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 C10orf76Q5T2E6 689 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 KLHDC7AQ5VTJ3 777 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 NFRKBQ6P4R8 1299 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 EMBQ6PCB8 327 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 POTEBQ6S5H4 581 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 CRYGNQ8WXF5 182 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 TLR10Q9BXR5 811 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 KANSL2Q9H9L4 492 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 PCDHA1Q9Y5I3 950 aa14.87□□□□□ -0.03
SHMT2-222ENST00000555774 GRID2IPA4D2P6 1211 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 BTNL10A8MVZ5 291 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 TLR2O60603 784 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 KRT18P05783 430 aaKnown RBP14.86□□□□□ -0.03
SHMT2-222ENST00000555774 MYBL2P10244 700 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 POLR2FP61218 127 aaKnown RBP14.86□□□□□ -0.03
SHMT2-222ENST00000555774 RAD51AP2Q09MP3 1159 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 NNTQ13423 1086 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 DRC1Q96MC2 740 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 LRRC1Q9BTT6 524 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 NLRC4Q9NPP4 1024 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 STIM2Q9P246 746 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 TRAF3IP3Q9Y228 551 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ATP8B3O60423 1300 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ATAD5Q96QE3 1844 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ARFGEF1Q9Y6D6 1849 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 GOLGA6BA6NDN3 693 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 FOSP01100 380 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-222ENST00000555774 NPR1P16066 1061 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ANXA13P27216 316 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 EPS15P42566 896 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ADAM9Q13443 819 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ASIC2Q16515 512 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 SLFN13Q68D06 897 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 FRMD5Q7Z6J6 570 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms