RNA–Protein interactions for RNA: ENST00000539934.5

DDX55-206, Transcript of DEAD-box helicase 55, human

TSL 5

Gene DDX55, Length 2,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-206	ENST00000539934	DNM1	Q05193	864 aa	Known RBP	13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	BRAP	Q7Z569	592 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	PCGF5	Q86SE9	256 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	HOOK3	Q86VS8	718 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	ZNF384	Q8TF68	577 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	CLIP3	Q96DZ5	547 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	TMEM87B	Q96K49	555 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	PYCARD	Q9ULZ3	195 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	PCDHAC2	Q9Y5I4	1007 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	GMEB1	Q9Y692	573 aa		13.9	□□□□□ -0.18
DDX55-206	ENST00000539934	ERICH2	A1L162	156 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	MINDY4B	A8MYZ0	360 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	FGFR1OP	O95684	399 aa	Known RBP	13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	MATR3	P43243	847 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	MAP3K9	P80192	1104 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	SREBF2	Q12772	1141 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	SMC1A	Q14683	1233 aa	Known RBP	13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	NAA25	Q14CX7	972 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	STK11IP	Q8N1F8	1099 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	TMEM87A	Q8NBN3	555 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	WDR66	Q8TBY9	1149 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	CD99L2	Q8TCZ2	262 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	WHAMM	Q8TF30	809 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	IWS1	Q96ST2	819 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.89	□□□□□ -0.19	1e-7	■■■□□ 15.9
DDX55-206	ENST00000539934	CENPO	Q9BU64	300 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	TSPY26P	Q9H489	355 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	RNF41	Q9H4P4	317 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	TMED5	Q9Y3A6	229 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	SCIN	Q9Y6U3	715 aa		13.89	□□□□□ -0.19
DDX55-206	ENST00000539934	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	SH2B2	O14492	632 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	CPLX1	O14810	134 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	SLU7	O95391	586 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	CCT8	P50990	548 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	PPARA	Q07869	468 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	TRIM29	Q14134	588 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	SPRYD7	Q5W111	196 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	FBXW10	Q5XX13	1052 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	RAB11FIP4	Q86YS3	637 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	COLQ	Q9Y215	455 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	ATXN2	Q99700	1313 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	PITPNM2	Q9BZ72	1349 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	GOLGA8A	A7E2F4	631 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	KIAA0754	O94854	1291 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	PHEX	P78562	749 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	CUL3	Q13618	768 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	DACT2	Q5SW24	774 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	C15orf52	Q6ZUT6	534 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	ZNF280C	Q8ND82	737 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	NKX2-3	Q8TAU0	364 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	TANGO6	Q9C0B7	1094 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	KCNF1	Q9H3M0	494 aa		13.88	□□□□□ -0.19
DDX55-206	ENST00000539934	LAMA2	P24043	3122 aa	Known RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	SALL1	Q9NSC2	1324 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	GOLGA6L9	A6NEM1	432 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	GADD45B	O75293	160 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	SKAP2	O75563	359 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	LDHB	P07195	334 aa	Known RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	IDO1	P14902	403 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	ALOX15	P16050	662 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	ARPC4	P59998	168 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	KRT85	P78386	507 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	TMEM67	Q5HYA8	995 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	PODN	Q7Z5L7	613 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	RETREG2	Q8NC44	543 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	ZSWIM5	Q9P217	1185 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	TTLL3	Q9Y4R7	772 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	IFIT3	O14879	490 aa	Known RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	ABL1	P00519	1130 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	HOXD11	P31277	338 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	TCF7	P36402	384 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	CAPRIN2	Q6IMN6	1127 aa	Known RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	FOXR1	Q6PIV2	292 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	IFNL1	Q8IU54	200 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	DRC7	Q8IY82	874 aa		13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.87	□□□□□ -0.19
DDX55-206	ENST00000539934	TMEM232	C9JQI7	657 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	HIP1R	O75146	1068 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	MCM3	P25205	808 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	METAP2	P50579	478 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	FAM173B	Q6P4H8	233 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	IGDCC4	Q8TDY8	1250 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	SLC10A4	Q96EP9	437 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	CEP63	Q96MT8	703 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	CD209	Q9NNX6	404 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	TACC3	Q9Y6A5	838 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	MYH2	Q9UKX2	1941 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	MYH15	Q9Y2K3	1946 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	CUL9	Q8IWT3	2517 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	CCDC69	A6NI79	296 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934		F8W031	263 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	LIN7A	O14910	233 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	ATP9B	O43861	1147 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	ERCC5	P28715	1186 aa	Predicted RBP	13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	INPP5B	P32019	993 aa		13.86	□□□□□ -0.19
DDX55-206	ENST00000539934	MICU3	Q86XE3	530 aa		13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms