RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 MBD6Q96DN6 1003 aa8.14□□□□□ -1.11
NUP54-209ENST00000510569 ZSWIM3Q96MP5 696 aa8.14□□□□□ -1.11
NUP54-209ENST00000510569 JAM3Q9BX67 310 aa8.14□□□□□ -1.11
NUP54-209ENST00000510569 PDGFDQ9GZP0 370 aaPredicted RBP8.14□□□□□ -1.11
NUP54-209ENST00000510569 PRODHO43272 600 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 CYP7B1O75881 506 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 PABPC1P11940 636 aaKnown RBP8.13□□□□□ -1.11
NUP54-209ENST00000510569 GRK2P25098 689 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 GRK3P35626 688 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 HABP4Q5JVS0 413 aaKnown RBP8.13□□□□□ -1.11
NUP54-209ENST00000510569 STYK1Q6J9G0 422 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 LBX2Q6XYB7 198 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 PROSER1Q86XN7 944 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 ZCCHC14Q8WYQ9 949 aaKnown RBP8.13□□□□□ -1.11
NUP54-209ENST00000510569 SAMD11Q96NU1 681 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 SSBP3Q9BWW4 388 aaPredicted RBP8.13□□□□□ -1.11
NUP54-209ENST00000510569 KRTAP3-1Q9BYR8 98 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 SMPD4Q9NXE4 827 aa8.13□□□□□ -1.11
NUP54-209ENST00000510569 B4GALT3O60512 393 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 IL13P35225 146 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 RBM25P49756 843 aaKnown RBP8.12□□□□□ -1.11
NUP54-209ENST00000510569 MLLT6P55198 1093 aaPredicted RBP8.12□□□□□ -1.11
NUP54-209ENST00000510569 ADAM17P78536 824 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 KIZQ2M2Z5 673 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 PKN3Q6P5Z2 889 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 OTOP3Q7RTS5 596 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 LRRC47Q8N1G4 583 aaKnown RBP8.12□□□□□ -1.11
NUP54-209ENST00000510569 UHMK1Q8TAS1 419 aaKnown RBP8.12□□□□□ -1.11
NUP54-209ENST00000510569 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.12□□□□□ -1.11
NUP54-209ENST00000510569 L2HGDHQ9H9P8 463 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 MSRB2Q9Y3D2 182 aa8.12□□□□□ -1.11
NUP54-209ENST00000510569 TRAV20A0A0B4J274 112 aa8.11□□□□□ -1.11
NUP54-209ENST00000510569 GPR85P60893 370 aa8.11□□□□□ -1.11
NUP54-209ENST00000510569 ZXDCQ2QGD7 858 aaPredicted RBP8.11□□□□□ -1.11
NUP54-209ENST00000510569 KCNT2Q6UVM3 1135 aa8.11□□□□□ -1.11
NUP54-209ENST00000510569 NSMFQ6X4W1 530 aa8.11□□□□□ -1.11
NUP54-209ENST00000510569 PLEKHH3Q7Z736 793 aa8.11□□□□□ -1.11
NUP54-209ENST00000510569 MYRFQ9Y2G1 1151 aa8.11□□□□□ -1.11
NUP54-209ENST00000510569 SLC27A2O14975 620 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 CYP1A1P04798 512 aaPredicted RBP8.1□□□□□ -1.11
NUP54-209ENST00000510569 COL6A1P12109 1028 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 SURF1Q15526 300 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 TMC5Q6UXY8 1006 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 DTX3Q8N9I9 347 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 CLEC4DQ8WXI8 215 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 C1QTNF3Q9BXJ4 246 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 TMEM168Q9H0V1 697 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 RBPJLQ9UBG7 517 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 CROTQ9UKG9 612 aa8.1□□□□□ -1.11
NUP54-209ENST00000510569 LAMTOR5O43504 91 aa8.09□□□□□ -1.11
NUP54-209ENST00000510569 IFRD2Q12894 506 aaPredicted RBP8.09□□□□□ -1.11
NUP54-209ENST00000510569 YOD1Q5VVQ6 348 aaPredicted RBP8.09□□□□□ -1.11
NUP54-209ENST00000510569 IFNL3Q8IZI9 196 aa8.09□□□□□ -1.11
NUP54-209ENST00000510569 TRIM55Q9BYV6 548 aa8.09□□□□□ -1.11
NUP54-209ENST00000510569 DLL4Q9NR61 685 aa8.09□□□□□ -1.11
NUP54-209ENST00000510569 NUB1Q9Y5A7 615 aa8.09□□□□□ -1.11
NUP54-209ENST00000510569 GRIN1Q05586 938 aa8.08□□□□□ -1.12
NUP54-209ENST00000510569 SPIRE1Q08AE8 756 aa8.08□□□□□ -1.12
NUP54-209ENST00000510569 TUSC3Q13454 348 aa8.08□□□□□ -1.12
NUP54-209ENST00000510569 VASNQ6EMK4 673 aa8.08□□□□□ -1.12
NUP54-209ENST00000510569 KLHL36Q8N4N3 616 aa8.08□□□□□ -1.12
NUP54-209ENST00000510569 FTSJ1Q9UET6 329 aa8.08□□□□□ -1.12
NUP54-209ENST00000510569 CHGBP05060 677 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 GNAT1P11488 350 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 FAHP16930 419 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 EPHA5P54756 1037 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 ZC3H6P61129 1189 aaKnown RBP8.07□□□□□ -1.12
NUP54-209ENST00000510569 PAN2Q504Q3 1202 aaKnown RBP8.07□□□□□ -1.12
NUP54-209ENST00000510569 DPH6Q7L8W6 267 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 LOXL4Q96JB6 756 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 GPR20Q99678 358 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 TELO2Q9Y4R8 837 aa8.07□□□□□ -1.12
NUP54-209ENST00000510569 ASXL2Q76L83 1435 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 BLACEA4D250 179 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 C1QTNF3-AMACRE9PGA6 284 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 NKRFO15226 690 aaKnown RBP eCLIP8.06□□□□□ -1.12
NUP54-209ENST00000510569 ADCY3O60266 1144 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 STK10O94804 968 aaKnown RBP8.06□□□□□ -1.12
NUP54-209ENST00000510569 SOD2P04179 222 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 COL6A2P12110 1019 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 INSRRP14616 1297 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 ZNF20P17024 532 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 EPHB4P54760 987 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 CPZQ66K79 652 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 TRMT10BQ6PF06 316 aaKnown RBP8.06□□□□□ -1.12
NUP54-209ENST00000510569 GLB1LQ6UWU2 654 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.06□□□□□ -1.12
NUP54-209ENST00000510569 CKAP2LQ8IYA6 745 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 C8orf49Q96NF6 230 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 SPATA9Q9BWV2 254 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 PPP4R1LQ9P1A2 415 aa8.06□□□□□ -1.12
NUP54-209ENST00000510569 ZNF536O15090 1300 aa8.05□□□□□ -1.12
NUP54-209ENST00000510569 FAM47E-STBD1D6RA91 191 aa8.05□□□□□ -1.12
NUP54-209ENST00000510569 RASGRF1Q13972 1273 aa8.05□□□□□ -1.12
NUP54-209ENST00000510569 SPATC1Q76KD6 591 aa8.05□□□□□ -1.12
NUP54-209ENST00000510569 RBM12BQ8IXT5 1001 aaKnown RBP8.05□□□□□ -1.12
NUP54-209ENST00000510569 KCNJ15Q99712 375 aa8.05□□□□□ -1.12
NUP54-209ENST00000510569 ADAM29Q9UKF5 820 aa8.05□□□□□ -1.12
NUP54-209ENST00000510569 DSEQ9UL01 958 aa8.05□□□□□ -1.12
NUP54-209ENST00000510569 PDPK1O15530 556 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms