RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 IL23AQ9NPF7 189 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 JADE2Q9NQC1 790 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 HDAC6Q9UBN7 1215 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 UBIAD1Q9Y5Z9 338 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 UMODL1Q5DID0 1318 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 SCN5AQ14524 2016 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 ESYT2A0FGR8 921 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 H3BRB1 525 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 PPFIA3O75145 1194 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 FGBP02675 491 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 LGALS2P05162 132 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 ITGB5P18084 799 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 ANKRD1Q15327 319 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 NTRK3Q16288 839 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 PKN1Q16512 942 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 TMEM240Q5SV17 173 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 JAKMIP3Q5VZ66 844 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 GDF6Q6KF10 455 aaPredicted RBP12.8□□□□□ -0.36
RFFL-204ENST00000414419 REXO1Q8N1G1 1221 aaKnown RBP12.8□□□□□ -0.36
RFFL-204ENST00000414419 BICD2Q8TD16 824 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 PGBD1Q96JS3 809 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 GPR20Q99678 358 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.8□□□□□ -0.36
RFFL-204ENST00000414419 MXRA8Q9BRK3 442 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 ZMYND12Q9H0C1 365 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 TUT1Q9H6E5 874 aaKnown RBP12.8□□□□□ -0.36
RFFL-204ENST00000414419 BCAS3Q9H6U6 928 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 TMEM260Q9NX78 707 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 PKD2L1Q9P0L9 805 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 GTF2IRD1Q9UHL9 959 aa12.8□□□□□ -0.36
RFFL-204ENST00000414419 ZNF215Q9UL58 517 aaPredicted RBP12.8□□□□□ -0.36
RFFL-204ENST00000414419 LAMA3Q16787 3333 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.79□□□□□ -0.36
RFFL-204ENST00000414419 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.79□□□□□ -0.36
RFFL-204ENST00000414419 HAS3O00219 553 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 PITPNM1O00562 1244 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 ATP9AO75110 1047 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 CDKL5O76039 1030 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 SREBF1P36956 1147 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 NLRP5P59047 1200 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 UTP14CQ5TAP6 766 aaKnown RBP12.79□□□□□ -0.36
RFFL-204ENST00000414419 ZNF365Q70YC5 407 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 DEFB123Q8N688 67 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 CAGE1Q8TC20 777 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 SCLYQ96I15 445 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 C16orf70Q9BSU1 422 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 WNT8AQ9H1J5 351 aa12.79□□□□□ -0.36
RFFL-204ENST00000414419 SLKQ9H2G2 1235 aaPredicted RBP12.79□□□□□ -0.36
RFFL-204ENST00000414419 C17orf102A2RUQ5 167 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 DEXIO95424 95 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 PFKMP08237 780 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 KCNA2P16389 499 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 RFC2P35250 354 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 CLK2P49760 499 aaKnown RBP12.78□□□□□ -0.36
RFFL-204ENST00000414419 SMAD3P84022 425 aaKnown RBP12.78□□□□□ -0.36
RFFL-204ENST00000414419 ARHGAP4P98171 946 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 CEP55Q53EZ4 464 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 ZNF697Q5TEC3 545 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 C16orf59Q7L2K0 433 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 DEFB128Q7Z7B8 93 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 SEPT1Q8WYJ6 367 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 SDF4Q9BRK5 362 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 SH3GLB2Q9NR46 395 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 KCNH7Q9NS40 1196 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 VPS54Q9P1Q0 977 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 TANC1Q9C0D5 1861 aa12.78□□□□□ -0.36
RFFL-204ENST00000414419 MYO9BQ13459 2157 aa12.77□□□□□ -0.36
RFFL-204ENST00000414419 IQCF3P0C7M6 154 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 GNAT1P11488 350 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 ACTN1P12814 892 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 TCF7P36402 384 aaPredicted RBP12.77□□□□□ -0.37
RFFL-204ENST00000414419 PTK7Q13308 1070 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 OTOP2Q7RTS6 562 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 CYP2W1Q8TAV3 490 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 AFAP1L1Q8TED9 768 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 GLG1Q92896 1179 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 ATP6V0A1Q93050 837 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 FTOQ9C0B1 505 aaKnown RBP eCLIP12.77□□□□□ -0.37
RFFL-204ENST00000414419 JPH1Q9HDC5 661 aaPredicted RBP12.77□□□□□ -0.37
RFFL-204ENST00000414419 SLC9A2Q9UBY0 812 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 MYH9P35579 1960 aaKnown RBP12.77□□□□□ -0.37
RFFL-204ENST00000414419 SZT2Q5T011 3432 aa12.77□□□□□ -0.37
RFFL-204ENST00000414419 LAMA2P24043 3122 aaKnown RBP12.77□□□□□ -0.37
RFFL-204ENST00000414419 ZBBXA8MT70 800 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 MEIS1O00470 390 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 PARNO95453 639 aaKnown RBP12.76□□□□□ -0.37
RFFL-204ENST00000414419 SMIM10L2AP0DMW4 78 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 SMIM10L2BP0DMW5 78 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 ARP10275 920 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 SELPP16109 830 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 XBP1P17861 261 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 NEK4P51957 841 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 AK2P54819 239 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 FAM109BQ6ICB4 259 aaPredicted RBP12.76□□□□□ -0.37
RFFL-204ENST00000414419 Q7L0L9 218 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 PLA2G4DQ86XP0 818 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 HERVK_113Q902F9 699 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 SMARCAD1Q9H4L7 1026 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 AZI2Q9H6S1 392 aa12.76□□□□□ -0.37
RFFL-204ENST00000414419 ERAP1Q9NZ08 941 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms