RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 TMEM253P0C7T8 217 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 COL6A2P12110 1019 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 TARBP2Q15633 366 aaKnown RBP7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 PKN1Q16512 942 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 PLEKHG4Q58EX7 1191 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 SYDE1Q6ZW31 735 aaPredicted RBP7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 OTOP3Q7RTS5 596 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 FGD2Q7Z6J4 655 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 DDX53Q86TM3 631 aaKnown RBP7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 NINJ1Q92982 152 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 TSPAN17Q96FV3 270 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 SCLYQ96I15 445 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 FAM84AQ96KN4 292 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 PPP1R16BQ96T49 567 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 MCOLN1Q9GZU1 580 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 KCNK12Q9HB15 430 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 SLC6A20Q9NP91 592 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 MAGEC2Q9UBF1 373 aaPredicted RBP7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 PCDHB4Q9Y5E5 795 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 HCFC2Q9Y5Z7 792 aa7.04□□□□□ -1.28
HMGB1P38-201ENST00000490557 PYGMP11217 842 aa7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 UBE2R2Q712K3 238 aaPredicted RBP7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 KIAA0907Q7Z7F0 614 aaPredicted RBP7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 TRIM48Q8IWZ4 208 aa7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 DHX37Q8IY37 1157 aaKnown RBP7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 PHOSPHO1Q8TCT1 267 aa7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 MYOTQ9UBF9 498 aa7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 DSEQ9UL01 958 aa7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 ZNF652Q9Y2D9 606 aa7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 FAN1Q9Y2M0 1017 aa7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 TNPO3Q9Y5L0 923 aaKnown RBP7.03□□□□□ -1.28
HMGB1P38-201ENST00000490557 MYOCOSA0A1B0GUC4 107 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 NFIBO00712 420 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 IRS4O14654 1257 aaPredicted RBP7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 SGSM2O43147 1006 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 PFKLP17858 780 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 KRT15P19012 456 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 EMC4Q5J8M3 183 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 CYP4F22Q6NT55 531 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 CNNM4Q6P4Q7 775 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 C16orf59Q7L2K0 433 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 CISD2Q8N5K1 135 aaKnown RBP7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 MFSD3Q96ES6 412 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 SMOC1Q9H4F8 434 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 BCAS3Q9H6U6 928 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 INTS7Q9NVH2 962 aaKnown RBP7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 COQ6Q9Y2Z9 468 aa7.02□□□□□ -1.29
HMGB1P38-201ENST00000490557 WNT9AO14904 365 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 SLC27A2O14975 620 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 DNAJC8O75937 253 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 NPTXRO95502 500 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 NEK4P51957 841 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 GYS2P54840 703 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 GPR19Q15760 415 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 OGFOD2Q6N063 350 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 ETV3LQ6ZN32 361 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 IGSF22Q8N9C0 903 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 SGPP1Q9BX95 441 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 CELF4Q9BZC1 486 aaKnown RBP7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 SAMD15Q9P1V8 674 aa7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 MBD1Q9UIS9 605 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P38-201ENST00000490557 TCAF2A6NFQ2 919 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 NKRFO15226 690 aaKnown RBP eCLIP7□□□□□ -1.29
HMGB1P38-201ENST00000490557 JMJD7P0C870 316 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 NCAM1P13591 858 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 PDE6AP16499 860 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 SDSP20132 328 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 PMLP29590 882 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 TXKP42681 527 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 NCKAP1LP55160 1127 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 DLG4P78352 724 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 CFAP100Q494V2 611 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 DALRD3Q5D0E6 543 aaKnown RBP7□□□□□ -1.29
HMGB1P38-201ENST00000490557 ZCCHC8Q6NZY4 707 aaKnown RBP7□□□□□ -1.29
HMGB1P38-201ENST00000490557 ARHGAP36Q6ZRI8 547 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 ZC3H18Q86VM9 953 aaKnown RBP7□□□□□ -1.29
HMGB1P38-201ENST00000490557 AMIGO3Q86WK7 504 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 LDHDQ86WU2 507 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 NLGN4XQ8N0W4 816 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 UHMK1Q8TAS1 419 aaKnown RBP7□□□□□ -1.29
HMGB1P38-201ENST00000490557 MZB1Q8WU39 189 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 RNF38Q9H0F5 515 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 CNTD2Q9H8S5 307 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 CABP5Q9NP86 173 aa7□□□□□ -1.29
HMGB1P38-201ENST00000490557 ETV2O00321 342 aaPredicted RBP6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 N4BP3O15049 544 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 TADA3O75528 432 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 CDR1P51861 262 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 ZNF460Q14592 562 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 ZNF648Q5T619 568 aaPredicted RBP6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 PIK3R6Q5UE93 754 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 LRRTM3Q86VH5 581 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 OSTM1Q86WC4 334 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 C2orf69Q8N8R5 385 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 WNK4Q96J92 1243 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 ASH2LQ9UBL3 628 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 CBLCQ9ULV8 474 aa6.99□□□□□ -1.29
HMGB1P38-201ENST00000490557 TCRBV5S2A0A599 114 aa6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 BUB1BO60566 1050 aaPredicted RBP6.98□□□□□ -1.29
HMGB1P38-201ENST00000490557 ASGR2P07307 311 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms