RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 MAGEA9P43362 315 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 METTL13Q8N6R0 699 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 BCAS4Q8TDM0 211 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 U2AF1L4Q8WU68 220 aaKnown RBP12.08□□□□□ -0.48
HDAC6-228ENST00000486227 USP27XA6NNY8 438 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 GRIN3BO60391 1043 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 LPXNO60711 386 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 CTDNEP1O95476 244 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 MYL1P05976 194 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 FDPSP14324 419 aaKnown RBP12.08□□□□□ -0.48
HDAC6-228ENST00000486227 CCNE1P24864 410 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 FKBP3Q00688 224 aaKnown RBP12.08□□□□□ -0.48
HDAC6-228ENST00000486227 SEL1L2Q5TEA6 688 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 CC2D1AQ6P1N0 951 aaPredicted RBP12.08□□□□□ -0.48
HDAC6-228ENST00000486227 CCDC25Q86WR0 208 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 SLC16A10Q8TF71 515 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 ZNF341Q9BYN7 854 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 RABEP2Q9H5N1 569 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 METTL14Q9HCE5 456 aaKnown RBP12.08□□□□□ -0.48
HDAC6-228ENST00000486227 TMEM260Q9NX78 707 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 RWDD2AQ9UIY3 292 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 PNMA3Q9UL41 463 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 MYO5BQ9ULV0 1848 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 TLDC2A0PJX2 215 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 GNGT1P63211 74 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 CAPN7Q9Y6W3 813 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 FAM205CA6NFA0 338 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 POTEMA6NI47 508 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 PLA2G4BP0C869 781 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 VSTM4Q8IW00 320 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 IFT20Q8IY31 132 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 WDR11Q9BZH6 1224 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 BARHL2Q9NY43 387 aa12.08□□□□□ -0.48
HDAC6-228ENST00000486227 CLGNO14967 610 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 ABCB4P21439 1286 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 MKRN3Q13064 507 aaKnown RBP12.07□□□□□ -0.48
HDAC6-228ENST00000486227 RPS6KA1Q15418 735 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 SPOUT1Q5T280 376 aaKnown RBP12.07□□□□□ -0.48
HDAC6-228ENST00000486227 CAPS2Q9BXY5 557 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 HAUS4Q9H6D7 363 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 SUGCTQ9HAC7 445 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 GOLGA8KD6RF30 607 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 F5H6K3 240 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 FOXN1O15353 648 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 KLRC3Q07444 240 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 PPP1R7Q15435 360 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 ARMCX5Q6P1M9 558 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 AP5M1Q9H0R1 490 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 SMIM23A6NLE4 172 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 PP2D1A8MPX8 630 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 CLNS1AP54105 237 aaKnown RBP12.07□□□□□ -0.48
HDAC6-228ENST00000486227 PEX26Q7Z412 305 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 KLHL7Q8IXQ5 586 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 CCDC26Q8TAB7 109 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 DCAF4Q8WV16 495 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 MYO1AQ9UBC5 1043 aa12.07□□□□□ -0.48
HDAC6-228ENST00000486227 PRR29P0C7W0 189 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 TMOD1P28289 359 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 PTPROQ16827 1216 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 EXOC3L4Q17RC7 722 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 SBK1Q52WX2 424 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 FAM83BQ5T0W9 1011 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 CLEC10AQ8IUN9 316 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 MXD3Q9BW11 206 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 STMN4Q9H169 189 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-228ENST00000486227 RIC8AQ9NPQ8 531 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 COMMD10Q9Y6G5 202 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 KDM4FA0A1W2PPD8 638 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 CLIC2O15247 247 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 CD19P15391 556 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 FAM160B2Q86V87 743 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 TRIM31Q9BZY9 425 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 BUB1O43683 1085 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 KRT19P08727 400 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 EIF2AK2P19525 551 aaKnown RBP12.06□□□□□ -0.48
HDAC6-228ENST00000486227 LIG4P49917 911 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 PAK2Q13177 524 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 ZBTB8OSQ8IWT0 167 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 NRBP2Q9NSY0 501 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 COL5A2P05997 1499 aaPredicted RBP12.06□□□□□ -0.48
HDAC6-228ENST00000486227 DLATP10515 647 aaKnown RBP12.06□□□□□ -0.48
HDAC6-228ENST00000486227 CCT5P48643 541 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 CALCOCO2Q13137 446 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 QRICH1Q2TAL8 776 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 KCNB2Q92953 911 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 GDAP1L1Q96MZ0 367 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 NACC1Q96RE7 527 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 BHMT2Q9H2M3 363 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 EMILIN3Q9NT22 766 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.06□□□□□ -0.48
HDAC6-228ENST00000486227 FLT1P17948 1338 aa12.06□□□□□ -0.48
HDAC6-228ENST00000486227 SIGLEC1Q9BZZ2 1709 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 RNF40O75150 1001 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 PPFIA4O75335 1185 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 MAN2A1Q16706 1144 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 APOBEC3FQ8IUX4 373 aaKnown RBP12.05□□□□□ -0.48
HDAC6-228ENST00000486227 TRIM58Q8NG06 486 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 CABS1Q96KC9 395 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 NAP1L3Q99457 506 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-228ENST00000486227 PLEKHA4Q9H4M7 779 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms