RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 KLHL23Q8NBE8 558 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 ZDHHC15Q96MV8 337 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 TTC14Q96N46 770 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 NEK1Q96PY6 1258 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 AGXT2Q9BYV1 514 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 CRNKL1Q9BZJ0 848 aaKnown RBP6.48□□□□□ -1.37
VPS41-211ENST00000466017 EHD4Q9H223 541 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 PALD1Q9ULE6 856 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 SLC4A4Q9Y6R1 1079 aa6.48□□□□□ -1.37
VPS41-211ENST00000466017 GLB1P16278 677 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 RPS12P25398 132 aaKnown RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 EVCP57679 992 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 RHBDL3P58872 404 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 EXOSC10Q01780 885 aaKnown RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 PLCB3Q01970 1234 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 GSTM4Q03013 218 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 CXCL9Q07325 125 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 PCDH1Q08174 1060 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 C19orf57Q0VDD7 668 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 TNIP1Q15025 636 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 ANKRD1Q15327 319 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 FKBP1CQ5VVH2 108 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 CIAPIN1Q6FI81 312 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 APOBEC3HQ6NTF7 200 aaKnown RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 MAP4K3Q8IVH8 894 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 STAG1Q8WVM7 1258 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 JDP2Q8WYK2 163 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 DPF2Q92785 391 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 CHMP4CQ96CF2 233 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 ZSCAN31Q96LW9 406 aaPredicted RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 DMRTB1Q96MA1 342 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 TRIM56Q9BRZ2 755 aaKnown RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 NOL10Q9BSC4 688 aaKnown RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 IDI2Q9BXS1 227 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 NAPBQ9H115 298 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 RNF41Q9H4P4 317 aaPredicted RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 ARMT1Q9H993 441 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 DBNDD1Q9H9R9 158 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 SRA1Q9HD15 236 aaKnown RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 OSGEPQ9NPF4 335 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 DCP1AQ9NPI6 582 aaPredicted RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 HDAC9Q9UKV0 1011 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 TTF2Q9UNY4 1162 aaKnown RBP6.47□□□□□ -1.37
VPS41-211ENST00000466017 DAGLAQ9Y4D2 1042 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 PSME4Q14997 1843 aa6.47□□□□□ -1.37
VPS41-211ENST00000466017 PNMA6FA0A0J9YX94 578 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 LOC100289279A0A1B0GTE1 492 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 E7EWF7 191 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 PRKAB2O43741 272 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 ORC4O43929 436 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 DRD2P14416 443 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 LMNB1P20700 586 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 RPS6KB1P23443 525 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 CRKP46108 304 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 NEK4P51957 841 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 DYNLL1P63167 89 aaKnown RBP6.46□□□□□ -1.38
VPS41-211ENST00000466017 CUL4AQ13619 759 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 ADCK5Q3MIX3 580 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS41-211ENST00000466017 AKNAD1Q5T1N1 836 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 FAM117BQ6P1L5 589 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 CTR9Q6PD62 1173 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 BLOC1S2Q6QNY1 142 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 SHISA5Q8N114 240 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 NLGN2Q8NFZ4 835 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 NCOA7Q8NI08 942 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 TEKT1Q969V4 418 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 ZBED3Q96IU2 234 aaPredicted RBP6.46□□□□□ -1.38
VPS41-211ENST00000466017 KRT23Q9C075 422 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 DNAJC25Q9H1X3 360 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 ZNF576Q9H609 170 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 CNNM2Q9H8M5 875 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 EPB41L4AQ9HCS5 686 aaPredicted RBP6.46□□□□□ -1.38
VPS41-211ENST00000466017 KCNQ5Q9NR82 932 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 ZNF277Q9NRM2 450 aaPredicted RBP6.46□□□□□ -1.38
VPS41-211ENST00000466017 AATFQ9NY61 560 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS41-211ENST00000466017 ARPP21Q9UBL0 812 aaPredicted RBP6.46□□□□□ -1.38
VPS41-211ENST00000466017 PPP1R1BQ9UD71 204 aaPredicted RBP6.46□□□□□ -1.38
VPS41-211ENST00000466017 CYP46A1Q9Y6A2 500 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 MYH2Q9UKX2 1941 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 MAST2Q6P0Q8 1798 aa6.46□□□□□ -1.38
VPS41-211ENST00000466017 PSMD14O00487 310 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 GRIN3BO60391 1043 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 GADD45BO75293 160 aaPredicted RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 ENTPD3O75355 529 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 APPP05067 770 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 SLC3A2P08195 630 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 PDIA4P13667 645 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 ITPKAP23677 461 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 LIFRP42702 1097 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 BTDP43251 543 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 PREPP48147 710 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 EIF6P56537 245 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 ZNF280AP59817 542 aaPredicted RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 TRDNQ13061 729 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 ENOX2Q16206 610 aaKnown RBP6.45□□□□□ -1.38
VPS41-211ENST00000466017 C12orf60Q5U649 245 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 NXPE4Q6UWF7 544 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 PRR23CQ6ZRP0 262 aa6.45□□□□□ -1.38
VPS41-211ENST00000466017 STOX1Q6ZVD7 989 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms