RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 CHST3Q7LGC8 479 aa16.26■□□□□ 0.19
SHKBP1-208ENST00000595726 RNF135Q8IUD6 432 aa16.26■□□□□ 0.19
SHKBP1-208ENST00000595726 MYOCDQ8IZQ8 938 aa16.26■□□□□ 0.19
SHKBP1-208ENST00000595726 CLEC4DQ8WXI8 215 aa16.26■□□□□ 0.19
SHKBP1-208ENST00000595726 HDAC6Q9UBN7 1215 aa16.26■□□□□ 0.19
SHKBP1-208ENST00000595726 TECTAO75443 2155 aa16.26■□□□□ 0.19
SHKBP1-208ENST00000595726 VPS13AQ96RL7 3174 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 M0R2C6 588 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 EDNRBP24530 442 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 HTRA4P83105 476 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 DLX2Q07687 328 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 RBL2Q08999 1139 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 LY6KQ17RY6 165 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 HERC4Q5GLZ8 1057 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 SESTD1Q86VW0 696 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 IFNL3Q8IZI9 196 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 RANBP17Q9H2T7 1088 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 IL17RBQ9NRM6 502 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 FAM86C1Q9NVL1 165 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 FAM50BQ9Y247 325 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 PLIN4Q96Q06 1357 aa16.25■□□□□ 0.19
SHKBP1-208ENST00000595726 PATL2C9JE40 543 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 H3BNC9 293 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 SMARCA5O60264 1052 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 EFCAB14O75071 495 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 RAB11FIP3O75154 756 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 HMMRO75330 724 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 MMP3P08254 477 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 TCF15Q12870 199 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 COL19A1Q14993 1142 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 CCDC96Q2M329 555 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 TRIM71Q2Q1W2 868 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 TIGD5Q53EQ6 642 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 CCDC62Q6P9F0 684 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 RNF207Q6ZRF8 634 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 DBF4BQ8NFT6 615 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 SP7Q8TDD2 431 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 APPBP2Q92624 585 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 ALG1Q9BT22 464 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 NSUN3Q9H649 340 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 GTF2IRD1Q9UHL9 959 aa16.24■□□□□ 0.19
SHKBP1-208ENST00000595726 MYH7P12883 1935 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 LOC102724159A0A0B4J2E5 919 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 LGR5O75473 907 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 PARNO95453 639 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 PTPN5P54829 565 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 RPS6P62753 249 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 HIC1Q14526 733 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 PWP2Q15269 919 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 RPAINQ86UA6 219 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 C7orf31Q8N865 590 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 EDAQ92838 391 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 PBXIP1Q96AQ6 731 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 GPCPD1Q9NPB8 672 aa16.23■□□□□ 0.19
SHKBP1-208ENST00000595726 FRMPD2Q68DX3 1309 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 DMDP11532 3685 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 RNF113AO15541 343 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 MBTPS2O43462 519 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 UPP2O95045 317 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 AMHP03971 560 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 RRP1P56182 461 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 ARHGAP1Q07960 439 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 MKRN4PQ13434 485 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 SMAD2Q15796 467 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 SYDE2Q5VT97 1194 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 SEPT14Q6ZU15 432 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 TMEM192Q8IY95 271 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 KBTBD3Q8NAB2 608 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 SEC62Q99442 399 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 OSBPL7Q9BZF2 842 aa16.22■□□□□ 0.19
SHKBP1-208ENST00000595726 DCHS1Q96JQ0 3298 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 TMEM221A6NGB7 291 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 TSPY2A6NKD2 308 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 M0R296 226 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 GFRA3O60609 400 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 GNAT2P19087 354 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 GTF2F1P35269 517 aaKnown RBP eCLIP16.21■□□□□ 0.191e-6■■■■■ 54.6
SHKBP1-208ENST00000595726 PSEN2P49810 448 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 PPARAQ07869 468 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 PTK7Q13308 1070 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 TSHZ3Q63HK5 1081 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 YME1L1Q96TA2 773 aa16.21■□□□□ 0.19
SHKBP1-208ENST00000595726 CSPG5O95196 566 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 GH1P01241 217 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 CASTP20810 708 aaKnown RBP16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 CTDSPL2Q05D32 466 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 HYAL1Q12794 435 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 CTC1Q2NKJ3 1217 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 BTNL9Q6UXG8 535 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 TRIM67Q6ZTA4 783 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 BMP8AQ7Z5Y6 402 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 FBXO11Q86XK2 927 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 TBC1D5Q92609 795 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 SAMD11Q96NU1 681 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 IGFLR1Q9H665 355 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 ALG13Q9NP73 1137 aaKnown RBP16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 PTPRZ1P23471 2315 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 CACNA1HO95180 2353 aa16.2■□□□□ 0.18
SHKBP1-208ENST00000595726 STXBP3O00186 592 aa16.19■□□□□ 0.18
SHKBP1-208ENST00000595726 LINC01565O15544 149 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms