RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 POLLQ9UGP5 575 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 KDM3AQ9Y4C1 1321 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 EDIL3O43854 480 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 SERPINB2P05120 415 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 IDEP14735 1019 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 AARSP49588 968 aaKnown RBP eCLIP14.98□□□□□ -0.01
SHMT2-222ENST00000555774 LRRC55Q6ZSA7 311 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 CUL5Q93034 780 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 NUCKS1Q9H1E3 243 aaKnown RBP14.98□□□□□ -0.01
SHMT2-222ENST00000555774 SH2D4AQ9H788 454 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 QSER1Q2KHR3 1735 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 LTBP1Q14766 1721 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 AKR1B1P15121 316 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 MRPL12P52815 198 aaKnown RBP14.98□□□□□ -0.01
SHMT2-222ENST00000555774 CCDC70Q6NSX1 233 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 CAGE1Q8TC20 777 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 DDX12PQ92771 950 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 IFIH1Q9BYX4 1025 aaKnown RBP14.98□□□□□ -0.01
SHMT2-222ENST00000555774 COA1Q9GZY4 146 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 NT5C3AQ9H0P0 336 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 JMJD4Q9H9V9 463 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 PCDHA13Q9Y5I0 950 aa14.98□□□□□ -0.01
SHMT2-222ENST00000555774 GYS1P13807 737 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 KIF11P52732 1056 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 CCDC96Q2M329 555 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 DPP8Q6V1X1 898 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-222ENST00000555774 LRRC47Q8N1G4 583 aaKnown RBP14.97□□□□□ -0.01
SHMT2-222ENST00000555774 HPS3Q969F9 1004 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 ALS2CR12Q96Q35 445 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 ARHGAP20Q9P2F6 1191 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 DDX25Q9UHL0 483 aaKnown RBP14.97□□□□□ -0.01
SHMT2-222ENST00000555774 SNX12Q9UMY4 172 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.97□□□□□ -0.01
SHMT2-222ENST00000555774 SSU72P8A0A1W2PR75 194 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 KLRG2A4D1S0 409 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-222ENST00000555774 POTEMA6NI47 508 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 ZNF263O14978 683 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 PJA2O43164 708 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 GNA14O95837 355 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 TNNI2P48788 182 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 MAPK8IP2Q13387 824 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-222ENST00000555774 DYMQ7RTS9 669 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 C2CD5Q86YS7 1000 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 ADGRF4Q8IZF3 695 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 MYOCDQ8IZQ8 938 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 NEK11Q8NG66 645 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 MTMR8Q96EF0 704 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 CEP63Q96MT8 703 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 DEF6Q9H4E7 631 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 BMP2KQ9NSY1 1161 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-222ENST00000555774 VPS18Q9P253 973 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 SERPINB13Q9UIV8 391 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 USP21Q9UK80 565 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 TFR2Q9UP52 801 aa14.97□□□□□ -0.01
SHMT2-222ENST00000555774 SRGAP2O75044 1071 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 HNRNPH2P55795 449 aaKnown RBP14.96□□□□□ -0.01
SHMT2-222ENST00000555774 CYP27A1Q02318 531 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 PDXDC1Q6P996 788 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 SP8Q8IXZ3 490 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 MMGT1Q8N4V1 131 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 CCDC155Q8N6L0 562 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 GOLGA5Q8TBA6 731 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 SYN2Q92777 582 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-222ENST00000555774 EEF2KMTQ96G04 330 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 SUGCTQ9HAC7 445 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 GPCPD1Q9NPB8 672 aa14.96□□□□□ -0.01
SHMT2-222ENST00000555774 MACROD2A1Z1Q3 448 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 ZBTB5O15062 677 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 TCP1P17987 556 aaKnown RBP14.95□□□□□ -0.02
SHMT2-222ENST00000555774 FKBP3Q00688 224 aaKnown RBP14.95□□□□□ -0.02
SHMT2-222ENST00000555774 COASYQ13057 564 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 ZCWPW2Q504Y3 356 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 BAP1Q92560 729 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 MMRN2Q9H8L6 949 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 JADE2Q9NQC1 790 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 FAM207AQ9NSI2 230 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-222ENST00000555774 LRRIQ3A6PVS8 624 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-222ENST00000555774 C6orf229H3BNL8 230 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 EIF4A3P38919 411 aaKnown RBP14.95□□□□□ -0.02
SHMT2-222ENST00000555774 GTF2IP78347 998 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 PICALMQ13492 652 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 HAS1Q92839 578 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 CCDC102AQ96A19 550 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 DNAJC19Q96DA6 116 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 CAPZA3Q96KX2 299 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 CWC15Q9P013 229 aaKnown RBP14.95□□□□□ -0.02
SHMT2-222ENST00000555774 COL4A3BPQ9Y5P4 624 aa14.95□□□□□ -0.02
SHMT2-222ENST00000555774 LRRC53A6NM62 1247 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 RBAK-RBAKDNI3L0D1 243 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 AKR1B10O60218 316 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 LMAN1P49257 510 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 MARSP56192 900 aaKnown RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 FAM26FQ5R3K3 315 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 KCNK18Q7Z418 384 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 NUDT12Q9BQG2 462 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 CEP72Q9P209 647 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 TSKSQ9UJT2 592 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 ATF5Q9Y2D1 282 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 HYOU1Q9Y4L1 999 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 UBR3Q6ZT12 1888 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms