RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 ZNF227Q86WZ6 799 aa6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 CCAR1Q8IX12 1150 aaKnown RBP6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 STAG1Q8WVM7 1258 aa6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 JDP2Q8WYK2 163 aa6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 COX4I2Q96KJ9 171 aa6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 POLR3GLQ9BT43 218 aa6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 ASPNQ9BXN1 380 aa6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 GSX1Q9H4S2 264 aaPredicted RBP6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 PPP1R9AQ9ULJ8 1098 aa6.2□□□□□ -1.42
HMGB1P23-201ENST00000518743 ABCC11Q96J66 1382 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 PPIP5K1Q6PFW1 1433 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 MKI67P46013 3256 aaKnown RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 A0A087X0B3 334 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 B4E1Z4 1266 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 DDX3YO15523 660 aaKnown RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 RNGTTO60942 597 aaKnown RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 GCP02774 474 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 ITGAVP06756 1048 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 PABPC1P11940 636 aaKnown RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 CYP7A1P22680 504 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 L1CAMP32004 1257 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 NTF4P34130 210 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 MAP2K2P36507 400 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 SLBPQ14493 270 aaKnown RBP eCLIP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 TTLL4Q14679 1199 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 NBPF12Q5TAG4 269 aaPredicted RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 PRAMEF13Q5VWM6 474 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 IGF2-ASQ6U949 168 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 DYMQ7RTS9 669 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 LRRTM3Q86VH5 581 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 SMYD4Q8IYR2 804 aaPredicted RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 C7orf61Q8IZ16 206 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 FMR1NBQ8N0W7 255 aaPredicted RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 ATL2Q8NHH9 583 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 WHAMMQ8TF30 809 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 EXOC2Q96KP1 924 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 POGKQ9P215 609 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 CEP131Q9UPN4 1083 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 DIS3Q9Y2L1 958 aaKnown RBP6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 TTC28Q96AY4 2481 aa6.19□□□□□ -1.42
HMGB1P23-201ENST00000518743 EIF3AQ14152 1382 aaKnown RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 USP47Q96K76 1375 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 BRINP1O60477 761 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 DEAF1O75398 565 aaPredicted RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 DLGAP3O95886 979 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 CPP00450 1065 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 CD247P20963 164 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 ASPAP45381 313 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 EPHB1P54762 984 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 GRB10Q13322 594 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 FAM209AQ5JX71 171 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 NOL9Q5SY16 702 aaKnown RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 AXDND1Q5T1B0 1012 aaPredicted RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 TDRD10Q5VZ19 366 aaKnown RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 CIAPIN1Q6FI81 312 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 ACAD11Q709F0 780 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 CTU1Q7Z7A3 348 aaKnown RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 RNF180Q86T96 592 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 PPFIBP1Q86W92 1011 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 C12orf50Q8NA57 414 aaPredicted RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 RIN3Q8TB24 985 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 BAHD1Q8TBE0 780 aaPredicted RBP6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 UBASH3BQ8TF42 649 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 KCTD13Q8WZ19 329 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 CEP41Q9BYV8 373 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 SUSD2Q9UGT4 822 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 AKT3Q9Y243 479 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 FAN1Q9Y2M0 1017 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 PCDHB12Q9Y5F1 795 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 RGPD5Q99666 1765 aa6.18□□□□□ -1.42
HMGB1P23-201ENST00000518743 NSD3Q9BZ95 1437 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 DOT1LQ8TEK3 1739 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 FAM181BA6NEQ2 426 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 GSG1L2A8MUP6 293 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 PRODHO43272 600 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 CBFA2T2O43439 604 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 ASLP04424 464 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 SLURP2P0DP57 97 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 POU3F2P20265 443 aaPredicted RBP6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 HMGB2P26583 209 aaKnown RBP6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 HOXC12P31275 282 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 MAP4K2Q12851 820 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 AUHQ13825 339 aaKnown RBP6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 NBPF9Q3BBW0 867 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 C8orf86Q6ZUL3 223 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 ARMCX6Q7L4S7 300 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 MAMDC2Q7Z304 686 aaPredicted RBP6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 NECAB2Q7Z6G3 386 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 DDX42Q86XP3 938 aaKnown RBP eCLIP6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 TRIM59Q8IWR1 403 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 RNF141Q8WVD5 230 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 DDX1Q92499 740 aaKnown RBP6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 ISL2Q96A47 359 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 FBXL18Q96ME1 805 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 PRAM1Q96QH2 718 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 CHMP4AQ9BY43 222 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 FBRSQ9HAH7 460 aa6.17□□□□□ -1.42
HMGB1P23-201ENST00000518743 SF3B6Q9Y3B4 125 aaKnown RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms