RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 RABGAP1Q9Y3P9 1069 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 GOLGA6L19H0YKK7 550 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 PYGLP06737 847 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 GCFC2P16383 781 aaKnown RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 COL9A3Q14050 684 aaPredicted RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 PKN2Q16513 984 aaKnown RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 DRAXINQ8NBI3 349 aaPredicted RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 BAG1Q99933 345 aaPredicted RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 SPZ1Q9BXG8 430 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 FAM107BQ9H098 131 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 ARHGEF10LQ9HCE6 1279 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 RBPJLQ9UBG7 517 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 PNMA3Q9UL41 463 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 XRCC5P13010 732 aaKnown RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 USP8P40818 1118 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 ZNF543Q08ER8 600 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 GRB14Q14449 540 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 MAP3K21Q5TCX8 1036 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 MFSD6Q6ZSS7 791 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 NCAPG2Q86XI2 1143 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 RIOX2Q8IUF8 465 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 NCOA7Q8NI08 942 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 ACER1Q8TDN7 264 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 FAM217BQ9NTX9 383 aaPredicted RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 RTEL1Q9NZ71 1219 aa8.62□□□□□ -1.03
USP4-211ENST00000485450 SCAF8Q9UPN6 1271 aaKnown RBP8.62□□□□□ -1.03
USP4-211ENST00000485450 LOXHD1Q8IVV2 1947 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 ARID2Q68CP9 1835 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 ICA1Q05084 483 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 ASPRV1Q53RT3 343 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 FBXW10Q5XX13 1052 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 TBC1D5Q92609 795 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 TMEM47Q9BQJ4 181 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 ASCC2Q9H1I8 757 aaPredicted RBP8.61□□□□□ -1.03
USP4-211ENST00000485450 BLOC1S6Q9UL45 172 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 HPS5Q9UPZ3 1129 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 SIP14410 1827 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 CCL15-CCL14A0A0B4J2E2 113 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 PDHXO00330 501 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 RPS6KB1P23443 525 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 ABCD1P33897 745 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 KRT85P78386 507 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 MTMR2Q13614 643 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 CCL15Q16663 113 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 OLFML2BQ68BL8 750 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 CDCA2Q69YH5 1023 aaPredicted RBP8.61□□□□□ -1.03
USP4-211ENST00000485450 CARD6Q9BX69 1037 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 ANO2Q9NQ90 1003 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 VPS18Q9P253 973 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 LIMCH1Q9UPQ0 1083 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 ZHX2Q9Y6X8 837 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 STK36Q9NRP7 1315 aa8.61□□□□□ -1.03
USP4-211ENST00000485450 CCP110O43303 1012 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 PPFIA2O75334 1257 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 PPFIA4O75335 1185 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 NDUFB10O96000 172 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 ERCC3P19447 782 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 APOBRQ0VD83 1088 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 CRHR2Q13324 411 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 TOB2Q14106 344 aaPredicted RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 TMCO4Q5TGY1 634 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 MAMDC4Q6UXC1 1216 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 RSRC2Q7L4I2 434 aaKnown RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 ARMC5Q96C12 935 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 FGD4Q96M96 766 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 SMCHD1A6NHR9 2005 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 COL4A6Q14031 1691 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 RPTORQ8N122 1335 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 CCDC151A5D8V7 595 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 FAM196BA6NMK8 535 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 hCG_1984214I3L0E3 225 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 FANCGO15287 622 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 FOXN1O15353 648 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 CTCFP49711 727 aaPredicted RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 RAB27AP51159 221 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 MNAT1P51948 309 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 TFAP4Q01664 338 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 DHX8Q14562 1220 aaKnown RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 LONRF2Q1L5Z9 754 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 GPATCH4Q5T3I0 446 aaKnown RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 RUFY3Q7L099 469 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 ZNF713Q8N859 430 aaPredicted RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 CCDC150Q8NCX0 1101 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 PXYLP1Q8TE99 480 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 CABP5Q9NP86 173 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 VWA5AO00534 786 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 GDF11O95390 407 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 MAGEA8P43361 318 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 MRPL12P52815 198 aaKnown RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 TRAF1Q13077 416 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 NTRK3Q16288 839 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 TRIM65Q6PJ69 517 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 DHX32Q7L7V1 743 aaKnown RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 TRMT44Q8IYL2 757 aaKnown RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 RABGGTAQ92696 567 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 ZNF274Q96GC6 653 aaPredicted RBP8.6□□□□□ -1.03
USP4-211ENST00000485450 LZTS2Q9BRK4 669 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 PARD6BQ9BYG5 372 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 KATNBL1Q9H079 304 aa8.6□□□□□ -1.03
USP4-211ENST00000485450 R3HDMLQ9H3Y0 253 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms