RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 DDX42Q86XP3 938 aaKnown RBP eCLIP5.25□□□□□ -1.57
HMGB1-204ENST00000399489 THNSL2Q86YJ6 484 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 C7orf61Q8IZ16 206 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 JMYQ8N9B5 988 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 PKNOX2Q96KN3 472 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 FERD3LQ96RJ6 166 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 NAP1L4Q99733 375 aaKnown RBP5.25□□□□□ -1.57
HMGB1-204ENST00000399489 CNTD2Q9H8S5 307 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 SUCOQ9UBS9 1254 aaKnown RBP5.25□□□□□ -1.57
HMGB1-204ENST00000399489 CD2APQ9Y5K6 639 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 SHTN1A0MZ66 631 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 VAV1P15498 845 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 NOP2P46087 812 aaKnown RBP5.24□□□□□ -1.57
HMGB1-204ENST00000399489 HLTFQ14527 1009 aaKnown RBP eCLIP5.24□□□□□ -1.57
HMGB1-204ENST00000399489 NR1I3Q14994 352 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 NOL9Q5SY16 702 aaKnown RBP5.24□□□□□ -1.57
HMGB1-204ENST00000399489 CNKSR3Q6P9H4 555 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 TMEM192Q8IY95 271 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 SYNPOQ8N3V7 929 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 FAM169BQ8N8A8 192 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 THAP3Q8WTV1 239 aaPredicted RBP5.24□□□□□ -1.57
HMGB1-204ENST00000399489 MZB1Q8WU39 189 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 CHAC2Q8WUX2 184 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 CPLX3Q8WVH0 158 aa5.24□□□□□ -1.57
HMGB1-204ENST00000399489 ATF3P18847 181 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 SDHBP21912 280 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 NFIXQ14938 502 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 TM4SF20Q53R12 229 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 PPP4R4Q6NUP7 873 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 TMC6Q7Z403 805 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 SP8Q8IXZ3 490 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 MARCH10Q8NA82 808 aaPredicted RBP5.23□□□□□ -1.57
HMGB1-204ENST00000399489 SRRTQ9BXP5 876 aaKnown RBP5.23□□□□□ -1.57
HMGB1-204ENST00000399489 CASS4Q9NQ75 786 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 ERVK13-1Q9NX77 482 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 MAP3K20Q9NYL2 800 aaKnown RBP5.23□□□□□ -1.57
HMGB1-204ENST00000399489 ACSL6Q9UKU0 697 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 PTCH2Q9Y6C5 1203 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 NUDT19A8MXV4 375 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 ASMTLO95671 621 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 GSTM1P09488 218 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 PFKLP17858 780 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 ZRSR2Q15696 482 aaKnown RBP5.23□□□□□ -1.57
HMGB1-204ENST00000399489 WDR78Q5VTH9 848 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 CRTC3Q6UUV7 619 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 CYP2R1Q6VVX0 501 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 SLCO6A1Q86UG4 719 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 PPM1EQ8WY54 764 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 NAP1L5Q96NT1 182 aaPredicted RBP5.23□□□□□ -1.57
HMGB1-204ENST00000399489 KCNC2Q96PR1 638 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 SLC9A7Q96T83 725 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 ANTXR1Q9H6X2 564 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 JADE2Q9NQC1 790 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 AP5S1Q9NUS5 200 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 MCM8Q9UJA3 840 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 MINPP1Q9UNW1 487 aa5.23□□□□□ -1.57
HMGB1-204ENST00000399489 CFAP69A5D8W1 941 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 CCER2I3L3R5 266 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 SYN1P17600 705 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 CDR1P51861 262 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 PMS1P54277 932 aaKnown RBP5.22□□□□□ -1.57
HMGB1-204ENST00000399489 EPHB3P54753 998 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 RBM10P98175 930 aaKnown RBP5.22□□□□□ -1.57
HMGB1-204ENST00000399489 MTERF2Q49AM1 385 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 C10orf62Q5T681 223 aaPredicted RBP5.22□□□□□ -1.57
HMGB1-204ENST00000399489 FBXW10Q5XX13 1052 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 C14orf80Q86SX3 495 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 MYO1HQ8N1T3 1032 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 TAB3Q8N5C8 712 aaPredicted RBP5.22□□□□□ -1.57
HMGB1-204ENST00000399489 SVIPQ8NHG7 77 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 DACT3Q96B18 629 aaPredicted RBP5.22□□□□□ -1.57
HMGB1-204ENST00000399489 MFSD3Q96ES6 412 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 TM9SF2Q99805 663 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 TMX4Q9H1E5 349 aaPredicted RBP5.22□□□□□ -1.57
HMGB1-204ENST00000399489 ST7Q9NRC1 585 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 KLHL14Q9P2G3 628 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 IMPACTQ9P2X3 320 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 ZNRF3Q9ULT6 936 aa5.22□□□□□ -1.57
HMGB1-204ENST00000399489 SF3B6Q9Y3B4 125 aaKnown RBP5.22□□□□□ -1.57
HMGB1-204ENST00000399489 WASHC2CQ9Y4E1 1318 aa5.21□□□□□ -1.57
HMGB1-204ENST00000399489 FAM86C2PA6NEL3 165 aa5.21□□□□□ -1.58
HMGB1-204ENST00000399489 RAB27AP51159 221 aa5.21□□□□□ -1.58
HMGB1-204ENST00000399489 RAPGEF1Q13905 1077 aa5.21□□□□□ -1.58
HMGB1-204ENST00000399489 ZC3H14Q6PJT7 736 aaKnown RBP5.21□□□□□ -1.58
HMGB1-204ENST00000399489 CCDC81Q6ZN84 652 aa5.21□□□□□ -1.58
HMGB1-204ENST00000399489 LDHDQ86WU2 507 aa5.21□□□□□ -1.58
HMGB1-204ENST00000399489 CAAP1Q9H8G2 361 aa5.21□□□□□ -1.58
HMGB1-204ENST00000399489 ZIM2Q9NZV7 527 aa5.21□□□□□ -1.58
HMGB1-204ENST00000399489 IRS4O14654 1257 aaPredicted RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 DIAPH1O60610 1272 aaKnown RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 EFEMP2O95967 443 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 MYCLP1P12525 358 aaPredicted RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 ITGA4P13612 1032 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 CTSKP43235 329 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 CBX2Q14781 532 aaPredicted RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 TARBP2Q15633 366 aaKnown RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 TTC8Q8TAM2 541 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 PANK1Q8TE04 598 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 JMJD8Q96S16 334 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 ASPSCR1Q9BZE9 553 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms