RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SUFUQ9UMX1 484 aa15□□□□□ -0.01
CSPG4-201ENST00000308508 PDE8AO60658 829 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 HNRNPCP07910 306 aaKnown RBP eCLIP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 HNRNPH2P55795 449 aaKnown RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 MYLK4Q86YV6 388 aaPredicted RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PRPF38AQ8NAV1 312 aaKnown RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 TEX12Q9BXU0 123 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 DNAAF3Q8N9W5 541 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 ACSBG1Q96GR2 724 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 NUDCD1Q96RS6 583 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PITPNM3Q9BZ71 974 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 UFL1O94874 794 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 SERPINB2P05120 415 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 IL2RBP14784 551 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 DR1Q01658 176 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 TSTA3Q13630 321 aaPredicted RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 ZSCAN10Q96SZ4 725 aaPredicted RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PCDH11XQ9BZA7 1347 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PCDH11YQ9BZA8 1340 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 HOXB7P09629 217 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 THOC5Q13769 683 aaKnown RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 SPOPLQ6IQ16 392 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 DTNBP1Q96EV8 351 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 YIPF3Q9GZM5 350 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 FAM96AQ9H5X1 160 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 MTMR6Q9Y217 621 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PNMA6AP0CW24 399 aaPredicted RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 MRPL47Q9HD33 250 aaKnown RBP14.99□□□□□ -0.01
CSPG4-201ENST00000308508 DISC1Q9NRI5 854 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PCDHB4Q9Y5E5 795 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 hCG_1642624A0A1W2PR95 340 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 LPXNO60711 386 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PDHA1P08559 390 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 SLCO1A2P46721 670 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 NUGGCQ68CJ6 796 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 KRT26Q7Z3Y9 468 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 PSTPIP2Q9H939 334 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 TRIM33Q9UPN9 1127 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 FAM135BQ49AJ0 1406 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 KDM1AO60341 852 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 STAT2P52630 851 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 TERF2Q15554 542 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 ZNF827Q17R98 1081 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 ZNF653Q96CK0 615 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 SLC24A3Q9HC58 644 aa14.99□□□□□ -0.01
CSPG4-201ENST00000308508 RANBP1P43487 201 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 UIMC1Q96RL1 719 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 MED23Q9ULK4 1368 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 SPDYE2BA6NHP3 402 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 SLFN14P0C7P3 912 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 SPDYE6P0CI01 402 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 DNMBPQ6XZF7 1577 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 ICA1LQ8NDH6 482 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 TRIM55Q9BYV6 548 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 MMEP08473 750 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 FAM26FQ5R3K3 315 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 GLG1Q92896 1179 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 GFAPP14136 432 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 PPARAQ07869 468 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 CENPUQ71F23 418 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 ANKRD13CQ8N6S4 541 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 NT5C1BQ96P26 610 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 PPP6R2O75170 966 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 TMOD1P28289 359 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 NRBP1Q9UHY1 535 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 FIS1Q9Y3D6 152 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 SLC4A7Q9Y6M7 1214 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 TYW5A2RUC4 315 aaKnown RBP14.98□□□□□ -0.01
CSPG4-201ENST00000308508 APOA1P02647 267 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 SERPINB10P48595 397 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 KIAA2013Q8IYS2 634 aa14.98□□□□□ -0.01
CSPG4-201ENST00000308508 CFAP65Q6ZU64 1925 aaKnown RBP14.98□□□□□ -0.01
CSPG4-201ENST00000308508 CA4P22748 312 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 HOXA7P31268 230 aaPredicted RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 DAB2P98082 770 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 GGA1Q9UJY5 639 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 POTEB3A0JP26 581 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 PTPREP23469 700 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 CXCR5P32302 372 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 TFAP4Q01664 338 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 NR1H3Q13133 447 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 ARHGEF16Q5VV41 709 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 POTEBQ6S5H4 581 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 PANX2Q96RD6 677 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 ZSWIM6Q9HCJ5 1215 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 COPG1Q9Y678 874 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 PRAG1Q86YV5 1406 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 RNMTO43148 476 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 IFNA8P32881 189 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 BASP1P80723 227 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 GRM1Q13255 1194 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 CPXCR1Q8N123 301 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 TMEM247A6NEH6 219 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 AFPP02771 609 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 IFRD2Q12894 506 aaPredicted RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 TRIM67Q6ZTA4 783 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 FAM89AQ96GI7 184 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 OLA1Q9NTK5 396 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 NPATQ14207 1427 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 1052.4 ms