RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 BcrQ6PAJ1 1270 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Cd209bQ8CJ91 325 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Eif3cQ8R1B4 911 aaKnown RBP12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Fgfr1op2Q9CRA9 253 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Morf4l2Q9R0Q4 288 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Npc1l1Q6T3U4 1333 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Plekha5E9Q6H8 1269 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Cdc37Q61081 379 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 VmacQ8BP01 174 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Stn1Q8K2X3 378 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Creb3l3Q91XE9 479 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Mphosph6Q9D1Q1 161 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Phkg2Q9DB30 406 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 NfkbiaQ9Z1E3 314 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tex14Q7M6U3 1450 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Slc27a1Q60714 646 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Daam1Q8BPM0 1077 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Cpsf3Q9QXK7 684 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Clic4Q9QYB1 253 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Flot2Q60634 428 aaKnown RBP12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Syf2Q9D198 242 aaKnown RBP12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tshz1Q5DTH5 1084 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Kctd10Q922M3 315 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Abcg3Q99P81 650 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Adgrb2Q8CGM1 1561 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Taf5lQ91WQ5 589 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Them5Q9CQJ0 248 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 SufuQ9Z0P7 484 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Arl4aP61213 200 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Palb2Q3U0P1 1104 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Prr18Q6PAN7 307 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Hps4Q99KG7 671 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm45194A0A140LJG2 572 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Il15P48346 162 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Mei4Q8BRM6 389 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Dtnbp1Q91WZ8 352 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Snx2Q9CWK8 519 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Atp6v0a1Q9Z1G4 839 aaKnown RBP12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Creb3Q61817 404 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tada3Q8R0L9 432 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Akt3Q9WUA6 479 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gbp4A4UUI3 631 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Dynlt1P51807 113 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Epn1Q80VP1 575 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 CtsqQ91ZF4 343 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tmem191cQ9JJB1 302 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Myom2Q14BI5 1463 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Kdm3bQ6ZPY7 1562 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Pgrmc1O55022 195 aa12.88□□□□□ -0.35
Trim56-201ENSMUST00000054384 Cyp11b2P15539 500 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 LmnaP48678 665 aaKnown RBP12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Olfr118Q7TRJ6 321 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Zfp449Q8CB76 518 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rwdd2aQ9D9S3 292 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Hsdl2Q2TPA8 490 aaKnown RBP12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Prmt9Q3U3W5 846 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ushbp1Q8R370 680 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Zfp418Q8BFS8 652 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Miga2Q8BK03 593 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tigd4Q8BUZ3 513 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Grtp1Q9D3N8 359 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm20425E9Q035 978 aaKnown RBP12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 SrprbP47758 269 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Aggf1Q7TN31 711 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Pstpip2Q99M15 334 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 SphkapQ6NSW3 1687 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 JrklB2RRL2 523 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Vmn2r68L7N2B3 851 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Copb2O55029 905 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 VdrP48281 422 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Myo1aO88329 1043 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Impg2Q80XH2 1243 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 3830403N18RikQ9D6C3 208 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Caln1Q9JJG7 219 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Slc8a3S4R2P9 928 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Pcyt1aP49586 367 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 1700013D24RikQ0P521 120 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Krt39Q6IFX4 482 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Plcb4Q91UZ1 1175 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Paip2bQ91W45 136 aa12.87□□□□□ -0.35
Trim56-201ENSMUST00000054384 Veph1A1A535 833 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 FscbA1EGX6 1074 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm21962L7N280 338 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Pcdha4O88689 947 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Krt4P07744 525 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tbc1d30Q69ZT9 766 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Cep70Q6IQY5 616 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 PpargP37238 505 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 NficP70255 439 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Mtmr10Q7TPM9 771 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Clec4gQ8BNX1 294 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Mrps9Q9D7N3 390 aaKnown RBP12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Frmpd4A2AFR3 1320 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Eno3P21550 434 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm1604bQ3TRG0 118 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Eps15l1Q60902 907 aaKnown RBP12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 L3mbtl3Q8BLB7 883 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Slc12a7Q9WVL3 1083 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Samd9lQ69Z37 1561 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Fam178bQ24JP3 464 aa12.86□□□□□ -0.35
Retrieved 100 of 22,080 RNA–protein pairs in 31 ms